TCONS_00035569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035569
Unique NameTCONS_00035569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035569 ID=TCONS_00035569|Name=TCONS_00035569|organism=Clytia hemisphaerica|type=transcript|length=434bp
cttttaaatccCTGTACTCATTCAAAAAATCCTCTAAAAACTCCTCTGGG
CTATCTGGCTTCCCTTGGCCAGtaaataatgaaaatacaaaTGGACGGGG
ATACACAAACATACCCAGAATAGGCCAAAGGTCAAGCCCTGTTGATTTGA
ACAAAGGTATGCCGTCAGCATTTACAATTAATTTGATGGTTGGTGAATTA
TAATTTGGATTATCTTCCAAACATCTcgaaattcccctttttattCCAAG
ATAGATATAGCTGCCTCCACATTTTTCTTCTACAGCAACCTCCCTAGGGG
TTTTCAACAGTGTACGTGAATCTTTTGGTAGATCATCGTGACCATTAAGA
CGCAATATTTTCAATAACTCTGTCACTCCACCGCGTCTGCAATCATTTTT
AACAGCCCATTTTCTCAGCTGCTCAGAAAAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00035569-protein

>TCONS_00035569-protein ID=TCONS_00035569-protein|Name=TCONS_00035569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
PFSEQLRKWAVKNDCRRGGVTELLKILRLNGHDDLPKDSRTLLKTPREVA
VEEKCGGSYIYLGIKRGISRCLEDNPNYNSPTIKLIVNADGIPLFKSTGL
DLWPILGMFVYPRPFVFSLFTGQGKPDSPEEFLEDFLNEYRDLK
Run BLAST on NCBI

transcript from alignment at sc0001333:53304..53737

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035569 ID=TCONS_00035569|Name=TCONS_00035569|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0001333:53304..53737 (Clytia hemisphaerica)
ACCTTTTTCTGAGCAGCTGAGAAAATGGGCTGTTAAAAATGATTGCAGAC
GCGGTGGAGTGACAGAGTTATTGAAAATATTGCGTCTTAATGGTCACGAT
GATCTACCAAAAGATTCACGTACACTGTTGAAAACCCCTAGGGAGGTTGC
TGTAGAAGAAAAATGTGGAGGCAGCTATATCTATCTTGGaataaaaaggg
gaatttcgAGATGTTTGGAAGATAATCCAAATTATAATTCACCAACCATC
AAATTAATTGTAAATGCTGACGGCATACCTTTGTTCAAATCAACAGGGCT
TGACCTTTGGCCTATTCTGGGTATGTTTGTGTATCCCCGTCCAtttgtat
tttcattatttaCTGGCCAAGGGAAGCCAGATAGCCCAGAGGAGTTTTTA
GAGGATTTTTTGAATGAGTACAGggatttaaaag

Coding sequence (CDS) from alignment at sc0001333:53304..53737

>TCONS_00035569 ID=TCONS_00035569|Name=TCONS_00035569|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0001333:53304..53737 (Clytia hemisphaerica)
CCTTTTTCTGAGCAGCTGAGAAAATGGGCTGTTAAAAATGATTGCAGACG
CGGTGGAGTGACAGAGTTATTGAAAATATTGCGTCTTAATGGTCACGATG
ATCTACCAAAAGATTCACGTACACTGTTGAAAACCCCTAGGGAGGTTGCT
GTAGAAGAAAAATGTGGAGGCAGCTATATCTATCTTGGaataaaaagggg
aatttcgAGATGTTTGGAAGATAATCCAAATTATAATTCACCAACCATCA
AATTAATTGTAAATGCTGACGGCATACCTTTGTTCAAATCAACAGGGCTT
GACCTTTGGCCTATTCTGGGTATGTTTGTGTATCCCCGTCCAtttgtatt
ttcattatttaCTGGCCAAGGGAAGCCAGATAGCCCAGAGGAGTTTTTAG
AGGATTTTTTGAATGAGTACAGggatttaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020822XLOC_020822Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035569-proteinTCONS_00035569-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035569-exon-sc0001333-1491911889:53304..53737TCONS_00035569-exon-sc0001333-1491911889:53304..53737Clytia hemisphaericaexon
TCONS_00035569-exon-sc0001333-1510915933:53304..53737TCONS_00035569-exon-sc0001333-1510915933:53304..53737Clytia hemisphaericaexon
TCONS_00035569-exon-sc0001333-1575043694:53304..53737TCONS_00035569-exon-sc0001333-1575043694:53304..53737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001333supercontigsc0001333:53304..53737 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.60534	1.77939	0.811247	2.21899	0.519878	0.883464	0	0.889125	1.16192	0.276686	0	0	0	0	0	0	0	0	0	0	0.623972	1.59177	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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