TCONS_00035565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035565
Unique NameTCONS_00035565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035565 ID=TCONS_00035565|Name=TCONS_00035565|organism=Clytia hemisphaerica|type=transcript|length=551bp
AAgcaatttcaatttgaaatgagataagaaaaaataaaactgaaaatgaa
agttgacAGGCAACTGATGATAGCAGGactaaagtttttaaaagtgaCAG
GACTATTTTTTAAGCTAGCtaaaccttttgaaaaattgggttCATAGACT
CTCAAAGGAGTATTTACACTTTTGGGGGATTAGCAATGATGTTTTGTTCA
TGTTTTAACAAGATTTCTTCCTCAAACAGGACAGGACATACATTTAAATG
GTGACAGTGAAGCTCCATCCAGTCCTtgcttttttacaaaatatcaatCC
CATTAAATTTCCCCAGGGATAAATTTCTAGTTAGAATACACAAGCAAGAA
TGcaatttttctcaaagaaataaATAGGGGGTAGAATAGAAATACTTACG
ATTCCAGATCTCTTGGGAGCTTGGGAGCAAAACCAAAGAAACATTTTCTG
GTTCCTTCCTTGGACTTGGACTTTCTCCATCAATTCCAGAACCAATGTGA
TTTTCGTTCAAAAAGTGGCATGTAATTCATGGTACTTTACATATTACGGC
T
Run BLAST on NCBI

transcript from alignment at sc0001333:1626..2176

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035565 ID=TCONS_00035565|Name=TCONS_00035565|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0001333:1626..2176 (Clytia hemisphaerica)
AGCCGTAATATGTAAAGTACCATGAATTACATGCCACTTTTTGAACGAAA
ATCACATTGGTTCTGGAATTGATGGAGAAAGTCCAAGTCCAAGGAAGGAA
CCAGAAAATGTTTCTTTGGTTTTGCTCCCAAGCTCCCAAGAGATCTGGAA
TCGTAAGTATTTCTATTCTACCCCCTATttatttctttgagaaaaattgC
ATTCTTGCTTGTGTATTCTAACTAGAAATTTATCCCTGGGGAAATTTAAT
GGGattgatattttgtaaaaaagcaAGGACTGGATGGAGCTTCACTGTCA
CCATTTAAATGTATGTCCTGTCCTGTTTGAGGAAGAAATCTTGTTAAAAC
ATGAACAAAACATCATTGCTAATCCCCCAAAAGTGTAAATACTCCTTTGA
GAGTCTATGaacccaatttttcaaaaggtttaGCTAGCTTAAAAAATAGT
CCTGtcacttttaaaaactttagtCCTGCTATCATCAGTTGCCTgtcaac
tttcattttcagttttattttttcttatctcatttcaaattgaaattgcT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020818XLOC_020818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035565-exon-sc0001333-1491911889:1626..2176TCONS_00035565-exon-sc0001333-1491911889:1626..2176Clytia hemisphaericaexon
TCONS_00035565-exon-sc0001333-1510915933:1626..2176TCONS_00035565-exon-sc0001333-1510915933:1626..2176Clytia hemisphaericaexon
TCONS_00035565-exon-sc0001333-1575043694:1626..2176TCONS_00035565-exon-sc0001333-1575043694:1626..2176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001333supercontigsc0001333:1626..2176 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311208	0	0.469821	1.49385	0	0.110546	0.133369	0	1.53293	2.43614	0.850127	1.27488	2.11035	2.23451	1.15085	1.49381	2.02473	1.69091	1.8097	1.74718	3.03237	3.5157	0.394661	0.829698	0	0.0994012	3.25695	3.64158	2.17253	1.79891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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