TCONS_00035563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035563
Unique NameTCONS_00035563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035563 ID=TCONS_00035563|Name=TCONS_00035563|organism=Clytia hemisphaerica|type=transcript|length=219bp
gttagaaataaaaataagtgTATAAAAATTCTTTGTCGTGGGTTGTTCTA
AAACCATAGGTCATTTGAAAGAGTTGGAAAAATATTGCAGGCTgtgtaaa
atcaaaatcaaaagagATGCAGCATATCCTAAATTCAAAgcatgtgaaaa
ttttaaagatGAAATTTTATCTGTGTATGGAATCACGTGCTTCAACGAGG
ACCAAAACGTATATCCAAA
Run BLAST on NCBI

transcript from alignment at sc0001333:56624..57152+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035563 ID=TCONS_00035563|Name=TCONS_00035563|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at sc0001333:56624..57152+ (Clytia hemisphaerica)
gttagaaataaaaataagtgTATAAAAATTCTTTGTCGTGGGTTGTTCTA
AAACCATAGGTCATTTGAAAGAGTTGGAAAAATATTGCAGGCTgtgtaaa
atcaaaatcaaaagagATGCAGCATATCCTAAATTCAAAgcatgtgaaaa
ttttaaagatgtaagttattttcattactttaaGCAGAACATAAATCTAA
ACACTATCAGACTATCCTGGTACATCCCCTCGCCTTCCTTTGGACTGCAG
GTATAGATTATTGCCACATTCAATCCTCGAAACCAGGCATATTCTTTTAC
TACCACTGTTTCGAAACATTTACTCGACTAGccaaatattgaaaaaagat
cTGTGATAAATAAATCATGCATTACTGTAccatatttttttttgattatc
AAGATGAGTTTCAGGCCTTGATATATGCATGACATTTTaccattttgacc
attttgctttTACATTTCAGGAAATTTTATCTGTGTATGGAATCACGTGC
TTCAACGAGGACCAAAACGTATATCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020816XLOC_020816Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035563-exon-sc0001333-1491911889:56624..56783TCONS_00035563-exon-sc0001333-1491911889:56624..56783Clytia hemisphaericaexon
TCONS_00035563-exon-sc0001333-1510915933:56624..56783TCONS_00035563-exon-sc0001333-1510915933:56624..56783Clytia hemisphaericaexon
TCONS_00035563-exon-sc0001333-1575043694:56624..56783TCONS_00035563-exon-sc0001333-1575043694:56624..56783Clytia hemisphaericaexon
TCONS_00035563-exon-sc0001333-1491911889:57094..57152TCONS_00035563-exon-sc0001333-1491911889:57094..57152Clytia hemisphaericaexon
TCONS_00035563-exon-sc0001333-1510915933:57094..57152TCONS_00035563-exon-sc0001333-1510915933:57094..57152Clytia hemisphaericaexon
TCONS_00035563-exon-sc0001333-1575043694:57094..57152TCONS_00035563-exon-sc0001333-1575043694:57094..57152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001333supercontigsc0001333:56624..57152 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.521703	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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