TCONS_00035561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035561
Unique NameTCONS_00035561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035561 ID=TCONS_00035561|Name=TCONS_00035561|organism=Clytia hemisphaerica|type=transcript|length=454bp
gaataattttaaaatgttttaatcaATGAAAAGTATTTGCTGATACGTTT
TTTAATCTTTAAAAACCCCCGGATTTGTAAATCTTGAATGTTTTGAATGT
GTCACATGgccgaaatttttttgaaaaaacagaaacatttttttgctgga
ATTTTTAGCTGGGAAGTctgtaaaaaatttttattgatatttttgatggA
TGGAGACTTTTTAATATTTAACGTTTGGAAACTTAAAGACGACATATTTG
ACACAATTCTTCTTAGGAAAGACATTAATGCTGTCATTTGGTGCTGGCCA
AAGCCAGGCACTTTCGGTCATTTAAACACTGAACTAAACTGAGTATTAAA
GGGAGTCTAGTTTGGAGTCTGGATTTCCAAGATTTGAAGTATTTAATAGA
CAGGACAATCAAAGATAATGGTAGAGACTTTCACTGGAATAAGTTTAAAC
GTCT
Run BLAST on NCBI

transcript from alignment at sc0001329:26384..26837

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035561 ID=TCONS_00035561|Name=TCONS_00035561|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at sc0001329:26384..26837 (Clytia hemisphaerica)
AGACGTTTAAACTTATTCCAGTGAAAGTCTCTACCATTATCTTTGATTGT
CCTGTCTATTAAATACTTCAAATCTTGGAAATCCAGACTCCAAACTAGAC
TCCCTTTAATACTCAGTTTAGTTCAGTGTTTAAATGACCGAAAGTGCCTG
GCTTTGGCCAGCACCAAATGACAGCATTAATGTCTTTCCTAAGAAGAATT
GTGTCAAATATGTCGTCTTTAAGTTTCCAAACGTTAAATATTAAAAAGTC
TCCATccatcaaaaatatcaataaaaattttttacagACTTCCCAGCTAA
AAATtccagcaaaaaaatgtttctgttttttcaaaaaaatttcggcCATG
TGACACATTCAAAACATTCAAGATTTACAAATCCGGGGGTTTTTAAAGAT
TAAAAAACGTATCAGCAAATACTTTTCATtgattaaaacattttaaaatt
attc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020814XLOC_020814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035561-exon-sc0001329-1491911889:26384..26837TCONS_00035561-exon-sc0001329-1491911889:26384..26837Clytia hemisphaericaexon
TCONS_00035561-exon-sc0001329-1510915933:26384..26837TCONS_00035561-exon-sc0001329-1510915933:26384..26837Clytia hemisphaericaexon
TCONS_00035561-exon-sc0001329-1575043694:26384..26837TCONS_00035561-exon-sc0001329-1575043694:26384..26837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001329supercontigsc0001329:26384..26837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59288	2.25936	2.95124	2.0853	0	0	0	0	0	0	0	0	0	0	0	0	0	0.11142	0	0.16108	0	0	0.166033	0.452844	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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