TCONS_00035557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035557
Unique NameTCONS_00035557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035557 ID=TCONS_00035557|Name=TCONS_00035557|organism=Clytia hemisphaerica|type=transcript|length=405bp
AGGAGTAAGAATTTTTCTTGTGAAAAGAGATGAACAATTTAAAGAACCCT
CAAAGTACATTATGAAATCTGGAAAAAACACACAAGTCCAAGACAAGTAT
ATGTGATGAGAACCGTCAAACGAGATAGATGAAAGAAACtgaatgaagaa
aatgaaggaTGGAGGGCGaggtgaagcgatttaaagaGAGGTGGAGAGTT
TGGGAAGGAAGCTGAAGGAACAAGAGGAAATTATTCTGGACGAACGAAAA
AGAAAGGAAAGACCCCAACTATAAAGCGATTTACGTTTATCGGTCTGGTC
CATCGAAGAATTTTTAAGGCTTGTCATTGTGGCCGTATTGGAGTACCACC
CTGAATGGTTGGACAAAGCTTTTGTTAGCaagAACCTCCTGAAGTCTTTG
ACAGT
Run BLAST on NCBI

transcript from alignment at sc0001329:25602..28798-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035557 ID=TCONS_00035557|Name=TCONS_00035557|organism=Clytia hemisphaerica|type=transcript|length=3197bp|location=Sequence derived from alignment at sc0001329:25602..28798- (Clytia hemisphaerica)
AGGAGTAAGAATTTTTCTTGTGAAAAGTAAGTTTTCTTTTCCTCTTTGGT
AAAAAGAGGTCCAAACAAATTTTTTTTACAATTTAAGAAAAACCTTTTAG
TTTTTCATTGAGACACATACGCATGAGGAAAAATAATTGAATTGAATATC
TCATAGCTCGAAATTTGTTCCTAAATATTTTGATTTTTGAATTAATTCAT
TTAATTCATTCTGTTACTTCTACATTTGTCTTTTACTTTGTACAGGAGAT
GAACAATTTAAAGAACCCTCAAAGTACATTATGAAATCTGGAAAAAACAC
ACAAGTCCAAGACAAGTATATGTGATGAGAACCGTCAAACGAGATAGATG
GTAAGGTTAAGTTCGTTTCATTGCAAAAACTTAGAATTTTCGGTAACTGA
ATTAATGCTTCTTTACTCGAACAATTTTTTATGATCCTTTAAACTAATAA
CTGCCCTATAAACCTTGTAAACAAGCTGTCATGTTTTAAGTTTCTCAAAC
TGCTACGTTAGGAAAAAGGGCCAAAATAAGCAAGGATGAGAAAAACTATT
GTTCCAAGGTTACAAAATTAAGTGGGGATAGTTTTGGAGTGCGCAATTGT
AATCATTGAATTTCAAGTGGGGATGAAATCAAAGTCAATTTCTCAGGGGT
GGGGCTGAAATTCAAGGATTTCTTTCGCCTCTGGTCGAAATTTTTACGGC
TCTGTGATACAGGGATGTTTAAAGTTCGCTCAAAGGATGTAAAATTTGGA
AAATCTGATCATATATTGATTGCCTTGAAAATTGTCAAGATTGCTCACAA
AAAATGCACTGGGTCCGATTTCAAAGGCCTAACATCGGGCTGCCGTTTTT
ATGAATCGAATGCCCCCCCCCTGGGCTGCATAACTCGAAATCTTAACTCT
ATCTAACAAGTTTGTGTCCCGCCGTGCGTCTTCGAGTTTTATCTGGCACC
CAGATAGTGAAATTTTCATCCGACACGCTGAAGCTCTGGAAGGTGAGAAA
AATTTTCAACACCTGGAAGGTTTAGATTACGAAATTTTGCAAGACCGCGT
CAAGGATTTTGAAACGGGAGGTATCTCGGGTAACCCAGCCCTCGTTTTCG
GGGATTGGCGGGTCCAACCGAAATATTTTTAGCTTAACGCACAAGCGCAG
TTGAACCCGAATACACGGGTTTCGAATTAAATCTAGCGCGAGAGAAAAAA
TCAAGTAAATAAAAGGAGCGATAAGGGGAAATGCCTTATAAAAGGTTGAT
AGATTTCCTTTCTTCTCTTTTGAAAGCCAGGTGTTCATTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCCCCCCCCCCCCCGCTTCTCTACTGTATGTTTTTCCACTTTCACTTT
GTCATAAAAATAAAAAGCAATCCTTCCGCACTCCAGTTTTAAGACGGGGG
TAAATAATTAAATATTTAAAAAATCTCTAAGCACTCTAAGGCTTCATTAT
TATTGCAGATTTATTTCTAACCGTGTTTTTTATAAATTTTAAATACAAAT
AATTTTACATAGAATAATTTTAAAATGTTTTAATCAATGAAAAGTATTTG
CTGATACGTTTTTTAATCTTTAAAAACCCCCGGATTTGTAAATCTTGAAT
GTTTTGAATGTGTCACATGGCCGAAATTTTTTTGAAAAAACAGAAACATT
TTTTTGCTGGAATTTTTAGCTGGGAAGTCTGTAAAAAATTTTTATTGATA
TTTTTGATGGATGGAGACTTTTTAATATTTAACGTTTGGAAACTTAAAGA
CGACATATTTGACACAATTCTTCTTAGGAAAGACATTAATGCTGTCATTT
GGTGCTGGCCAAAGCCAGGCACTTTCGGTCATTTAAACACTGAACTAAAC
TGAGTATTAAAGGGAGTCTAGTTTGGAGTCTGGATTTCCAAGATTTGAAG
TATTTAATAGACAGGACAATCAAAGATAATGGTAGAGACTTTCACTGGAA
TAAGTTTAAACGTCTCGATGATTAACACCCTTGCCCCATGATTGCACTTT
TTGGTAATTAGTCAATGTTATTTATTTTTATGGTTTTCGATCTTTGATTT
TAGAAAGAAACTGAATGAAGAAAATGAAGGATGGAGGGCGAGGTGAAGCG
ATTTAAAGAGAGGTGGAGAGTTTGGGAAGGAAGCTGAAGGAACAAGAGGA
AATTATTCTGGACGAACGAAAAAGAAAGGAAAGACCCCAACTATAAAGCG
ATTTACGTTTATCGGTCTGGTCCATCGAAGAATTTTTAAGGCTTGTCATT
GTGGCCGTATTGGAGGTAGGTGTAATTCACAAATAAATTATTTTCTAAAC
AAACAAAATCAACTGTCTCGGTCAGTATCTTTCTCAGGCTGAAAAATGAC
AAAGAACTCGTAAATATCATTTTGTTAGACTTTTTTAGCAGCTCTGCTCT
GACGTAACATGAGAGTTTTATAACAAAATCTGTTTTAAACTTAAATTGCC
TTATTCTCTTATTGTAATCCAAATTTTATTTTACTTTCTTCAGTACCACC
CTGAATGGTTGGACAAAGCTTTTGTTAGCAAGGTTTGTTTGTTTTCTTTG
TACTCCCAGTTTCATGGGAACTTACTATAGATGTTATTTTGAATGATGAT
GTCTATTGTGTCCAGTAGGTTAATGGATTGTAAGGGTCTTATTTAAACGG
TGTCATACAGGGCAATCACCCAAATCTTATTGAAAAATCCTGTCACATTC
CAAAAATTGCATTTTCTTTCTTAGAACCTCCTGAAGTCTTTGACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020811XLOC_020811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035557-exon-sc0001329-1575043694:28773..28798TCONS_00035557-exon-sc0001329-1575043694:28773..28798Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1575043694:28449..28553TCONS_00035557-exon-sc0001329-1575043694:28449..28553Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1575043694:26084..26295TCONS_00035557-exon-sc0001329-1575043694:26084..26295Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1575043694:25817..25855TCONS_00035557-exon-sc0001329-1575043694:25817..25855Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1575043694:25602..25624TCONS_00035557-exon-sc0001329-1575043694:25602..25624Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1510915933:28773..28798TCONS_00035557-exon-sc0001329-1510915933:28773..28798Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1510915933:28449..28553TCONS_00035557-exon-sc0001329-1510915933:28449..28553Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1510915933:26084..26295TCONS_00035557-exon-sc0001329-1510915933:26084..26295Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1510915933:25817..25855TCONS_00035557-exon-sc0001329-1510915933:25817..25855Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1510915933:25602..25624TCONS_00035557-exon-sc0001329-1510915933:25602..25624Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1491911889:28773..28798TCONS_00035557-exon-sc0001329-1491911889:28773..28798Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1491911889:28449..28553TCONS_00035557-exon-sc0001329-1491911889:28449..28553Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1491911889:26084..26295TCONS_00035557-exon-sc0001329-1491911889:26084..26295Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1491911889:25817..25855TCONS_00035557-exon-sc0001329-1491911889:25817..25855Clytia hemisphaericaexon
TCONS_00035557-exon-sc0001329-1491911889:25602..25624TCONS_00035557-exon-sc0001329-1491911889:25602..25624Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001329supercontigsc0001329:25602..28798 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.724036	0.199229	1.22969	0.418196	0.732302	2.50759	0	0	0	0	0	0	0	0.375058	0	0	0.135883	0	0	0	0	0	0.207541	0.566055	0.194341	0	0	0	0.200906	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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