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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035554 ID=TCONS_00035554|Name=TCONS_00035554|organism=Clytia hemisphaerica|type=transcript|length=264bp
tggtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatg
atgatgacgatgatgacgatggtgatgatgatgaaaatggAGGGAATAAC
GCTGTCCCCATTGACAGCCTGCTGTTAAACCACCAGCAAAAAGCAAAAAC
GGATATCGCGACATCAACACCAGCTGTTGCCAACGATGTGGCACAGCTTG
ATATAAATGTTTCACCGATTGTTATTAACACAATTAATGACGAGAGCACG
GCTGTTGAGGTAAG Run BLAST on NCBI transcript from alignment at sc0001329:40532..42360+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035554 ID=TCONS_00035554|Name=TCONS_00035554|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at sc0001329:40532..42360+ (Clytia hemisphaerica)
tggtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatg
atgatgacgatgatgacgatggtgatgatgatgaaaatggAGGGAATAAC
GCTGTCCCCATTGACAGGtaagatcaatttttttttcatttttcaatcat
ttcatATTCATGAAAATGTTTGCAAATTTGCATATCGAAttagtagtaag
taagtctgcgaccgcagtcggaggcgacccgaaggctcctctttcgatag
ctatctacccgaaggtaggggagggcgccactctttctccctggatttct
ccacttacccttgatccttctcttagttgctgagcatcaagcagagaggc
atcaagtaccattttgggaatctttggtatgacccggctgggggttgaac
ccacaaccttgcgaaccgtagccggatgctctaccactgtactacggtcg
ctcGAATTATGATGGTCGTAGTTAAACTTATTTAAAACGTTAAATTTACT
TGATACAATAATTCAACCTCGGTCATATTCCTCAGTACAGCTCTCACTGA
CCGGTCATTGTAGAACCTCGGAGGTCTTGATTTCGAAGGCATGCCTTAAA
ATGCCGAGCGCCGAGAACAAATTTTCCTTGATAATCCTTTACCAGTCGCT
CCAGAAGCCAACCACGCCTCTAAGAGTGATTTTCTCAaatgtttatttgt
tttttagCCTGCTGTTAAACCACCAGCAAAAAGCAAAAACGGTATGAGCT
TATTTAGTACAGTATGATGCAATATATCGTTAGGGACTGGAAAATTTTGA
GGAAGAAGgcattttttgccttttttgctAAATCTGAATTTCAACAGTCA
GAGCCCGTATTGTGTGCATTAATGAAATTCATTTAGACCGTTCTTACAGA
TTGAATTTTACAAAGAGTCCATCTAAGTATTCTTTATTTCAGGTTTATTT
AATTTCAAACTTTGCCGTATCAGCAgtgtattattttttattcatttatt
attTGGAAACCAGGATATCGCGACATCAACACCAGCTGTTGCCAACGATG
TGGCACAGCTTGATATAAATGTTTCACCGGTAAGTGTTTTCCGTACGAGT
ATTGTACCACATTGTACGGCTATACATGATTGTTTAGATGACAACAAAAC
AATATCGTTAATATTATAAAAtgcttattcccaaagcaataATCACATCA
TCGCCGTAGCAATCAATTCACGGTAGAAATACTTTATTGCTTAAACTTTT
AACTCATATGAACTCACATAAACAGTTTGGAAGCGTGCTCGAAATAATTG
GCAGCCctcttaaggcttggggacacgagaagttttgtTCGCGTTGATGC
AatacaacatgctccatcccaccaacacgaGAAAGAATTGCGTGTctaat
ggtttctttttttgtttcaagggACAAAaggtgagggaaatacccaaaag
acaccctgattttgtcccagggacaaaagtgagaagcacaaatgttatta
CAAGAAAAATGGGGGGTAGACacaagaaagcgtttcaggttcgTGGGATG
GAGCATATTGCATTGCACCCACGCGAAAAAGatttctcgtgtccccaagt
cTTTAAGCTTACCTATTTTCTACAAAGAGATAAATGAAAGAGGCGTAGCC
ACTGCAACCCTAGATGAAATGATTCTAATATGTAGCTTAACTCAAACAAA
CTCAAACAGACAGCTCCCCTTCAGCCTCAAAatgttgtttgtgttttaat
aagaatttaaaccctttgtttttttctatCAGATTGTTATTAACACAATT
AATGACGAGAGCACGGCTGTTGAGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035554-exon-sc0001329-1491911889:40532..40648 | TCONS_00035554-exon-sc0001329-1491911889:40532..40648 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1510915933:40532..40648 | TCONS_00035554-exon-sc0001329-1510915933:40532..40648 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1575043694:40532..40648 | TCONS_00035554-exon-sc0001329-1575043694:40532..40648 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1491911889:41239..41272 | TCONS_00035554-exon-sc0001329-1491911889:41239..41272 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1510915933:41239..41272 | TCONS_00035554-exon-sc0001329-1510915933:41239..41272 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1575043694:41239..41272 | TCONS_00035554-exon-sc0001329-1575043694:41239..41272 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1491911889:41545..41610 | TCONS_00035554-exon-sc0001329-1491911889:41545..41610 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1510915933:41545..41610 | TCONS_00035554-exon-sc0001329-1510915933:41545..41610 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1575043694:41545..41610 | TCONS_00035554-exon-sc0001329-1575043694:41545..41610 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1491911889:42314..42360 | TCONS_00035554-exon-sc0001329-1491911889:42314..42360 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1510915933:42314..42360 | TCONS_00035554-exon-sc0001329-1510915933:42314..42360 | Clytia hemisphaerica | exon |
| TCONS_00035554-exon-sc0001329-1575043694:42314..42360 | TCONS_00035554-exon-sc0001329-1575043694:42314..42360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001329 | supercontig | sc0001329:40532..42360 + |
Blast
The following BLAST results are available for this feature:
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