TCONS_00035553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035553
Unique NameTCONS_00035553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035553 ID=TCONS_00035553|Name=TCONS_00035553|organism=Clytia hemisphaerica|type=transcript|length=574bp
NNGGCTTCTGTCGTTGTTTCGTCCAAGTCTCAGTCTATTTGGTGTGATGA
TATCCAATGATTGCAAGTCTCCATCGTAGTCACGAATGCCTAATGGTAGA
TCATTGATGCTGTTTGCTGCTCGAGATGCGAATGTCTCCCATTGCATGAT
TGATAGTCGTTGATTGGAGACTGATTTTTGGATGGACTTCTTGACTTTTT
TCGTTCTACGAGACCATTCATATTGTGGCCTCCCACTGGACAAGTGTTGA
AATCGACATTTGATTCTTTGAAGAGACGACGTTGGATGTcttgaaaatca
atttgaagTGTTTCGCAAGCCTTGACGAGTTGGCTACCCTCATCAGTGAG
CAGTCGACGTGGATACCCAACTTCGCACGATATTCGAGTGAATGCTTGTA
GGAATGCGTTTGTCGAGTAATCCTCCATGCATTTGATGCTGATGGTGGTG
GTAGTAGCACAGCAGAAGACGGCGTACCAGATCTTGACAGTGGCCCTCTT
GTTGTGATACGAGTATGATTCAAATGGACCACACAAATCGACTTGAGATA
CGTAGAAGATTGGAGCAATCATCA
Run BLAST on NCBI

protein sequence of TCONS_00035553-protein

>TCONS_00035553-protein ID=TCONS_00035553-protein|Name=TCONS_00035553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MIAPIFYVSQVDLCGPFESYSYHNKRATVKIWYAVFCCATTTTISIKCME
DYSTNAFLQAFTRISCEVGYPRRLLTDEGSQLVKACETLQIDFQDIQRRL
FKESNVDFNTCPVGGHNMNGLVERKKSRSPSKNQSPINDYQSCNGRHSHL
EQQTASMIYH
Run BLAST on NCBI

transcript from alignment at sc0001328:61286..61859

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035553 ID=TCONS_00035553|Name=TCONS_00035553|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0001328:61286..61859 (Clytia hemisphaerica)
TGATGATTGCTCCAATCTTCTACGTATCTCAAGTCGATTTGTGTGGTCCA
TTTGAATCATACTCGTATCACAACAAGAGGGCCACTGTCAAGATCTGGTA
CGCCGTCTTCTGCTGTGCTACTACCACCACCATCAGCATCAAATGCATGG
AGGATTACTCGACAAACGCATTCCTACAAGCATTCACTCGAATATCGTGC
GAAGTTGGGTATCCACGTCGACTGCTCACTGATGAGGGTAGCCAACTCGT
CAAGGCTTGCGAAACActtcaaattgattttcaagACATCCAACGTCGTC
TCTTCAAAGAATCAAATGTCGATTTCAACACTTGTCCAGTGGGAGGCCAC
AATATGAATGGTCTCGTAGAACGAAAAAAGTCAAGAAGTCCATCCAAAAA
TCAGTCTCCAATCAACGACTATCAATCATGCAATGGGAGACATTCGCATC
TCGAGCAGCAAACAGCATCAATGATCTACCATTAGGCATTCGTGACTACG
ATGGAGACTTGCAATCATTGGATATCATCACACCAAATAGACTGAGACTT
GGACGAAACAACGACAGAAGCCNN

Coding sequence (CDS) from alignment at sc0001328:61286..61859

>TCONS_00035553 ID=TCONS_00035553|Name=TCONS_00035553|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at sc0001328:61286..61859 (Clytia hemisphaerica)
ATGATTGCTCCAATCTTCTACGTATCTCAAGTCGATTTGTGTGGTCCATT
TGAATCATACTCGTATCACAACAAGAGGGCCACTGTCAAGATCTGGTACG
CCGTCTTCTGCTGTGCTACTACCACCACCATCAGCATCAAATGCATGGAG
GATTACTCGACAAACGCATTCCTACAAGCATTCACTCGAATATCGTGCGA
AGTTGGGTATCCACGTCGACTGCTCACTGATGAGGGTAGCCAACTCGTCA
AGGCTTGCGAAACActtcaaattgattttcaagACATCCAACGTCGTCTC
TTCAAAGAATCAAATGTCGATTTCAACACTTGTCCAGTGGGAGGCCACAA
TATGAATGGTCTCGTAGAACGAAAAAAGTCAAGAAGTCCATCCAAAAATC
AGTCTCCAATCAACGACTATCAATCATGCAATGGGAGACATTCGCATCTC
GAGCAGCAAACAGCATCAATGATCTACCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020807XLOC_020807Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035553-proteinTCONS_00035553-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035553-exon-sc0001328-1491911889:61286..61859TCONS_00035553-exon-sc0001328-1491911889:61286..61859Clytia hemisphaericaexon
TCONS_00035553-exon-sc0001328-1510915933:61286..61859TCONS_00035553-exon-sc0001328-1510915933:61286..61859Clytia hemisphaericaexon
TCONS_00035553-exon-sc0001328-1575043694:61286..61859TCONS_00035553-exon-sc0001328-1575043694:61286..61859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001328supercontigsc0001328:61286..61859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.768777	0.491392	0	0.176708	1.86774	3.14315	0.311502	0	0.193404	0.207766	0	0.239327	0	0	0	0	0	0.074789	0	0	0.184241	0	0	0.0234177	0	0	0.214187	0.232319	0	0.427294
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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