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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035548 ID=TCONS_00035548|Name=TCONS_00035548|organism=Clytia hemisphaerica|type=transcript|length=962bp
CTAAGAACCATAAAGCAGTTTGGTGTGACTTATGTAATCTTTGGATCCAT
ATCAAGTGCAACAATACACCTCCCGATGTCTATGAGCAGCTCAAACTTGA
GGAAAATCCATGGTTTTGTCAACGTTGCTTCAATCATATAGTACCTTTTG
GAAACATAACACATGAAGACCTTAAATTAACTCTACAAGGTAAGaattgt
gatttctttttagaCCCTGATAACGATATTAACGTCCAATTCTACAGAGA
TATAGAGGATGCCCTAGACCAGGATGATTCATTGACTGCTGACTGTCCTT
ATCTAACTATAAGTGAAGTAAATgagaaatttaacaaaaataaccCTTGT
ATTTCTGTACTCCATCTAAACATTGCATCACTAAAACTTCACTTCGATGA
ACTTTTAATAACTCTTGAAAATTGCTCCATCCCTTTCAATTTTATTGGCA
TTACTGAGACTGGATTCAAAGAtgaaataaaagcaaaaaactCCTCCACG
TTAAAGAATTACCACCACTTTGACTGCTGCACTACTTCAAACCGTGGGGG
GGGGCCAGACTCTATATCTCTAAAGGATTCCACTCAACTCCGAGAGATGA
TCTTACCTTATACAAAAACAATGAGGTTGAATCTGTGGTCAGAGAGTGAT
ATGTGGTATGAGAATGATANAAAACAATGAGGTTGAATCTGTGGTCAGAG
AGGTTGTGTATGAGAATGATAAAAACTTCATTGTTGCATGCATATATAAA
CACCCAAGTGCTGATTCTGAAAACTTTATATCTCTTTACACTGATCTTCT
TGACAAAATTACATCAGAGAATAAAAAAGCAATTATTTTTGGTGATTTCA
ACTACGACCTATTATTGTCTGAATCTAAGCAAAATATTGATGATTTCCTT
AGCTCCAATTTGACTCATTGTTTCATTCCGACCATTACCAGACCAACAAG
GATAACTCCAAC Run BLAST on NCBI protein sequence of TCONS_00035548-protein >TCONS_00035548-protein ID=TCONS_00035548-protein|Name=TCONS_00035548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
KNHKAVWCDLCNLWIHIKCNNTPPDVYEQLKLEENPWFCQRCFNHIVPFG
NITHEDLKLTLQGKNCDFFLDPDNDINVQFYRDIEDALDQDDSLTADCPY
LTISEVNEKFNKNNPCISVLHLNIASLKLHFDELLITLENCSIPFNFIGI
TETGFKDEIKAKNSSTLKNYHHFDCCTTSNRGGGPDSISLKDSTQLREMI
LPYTKTMRLNLWSESDMWYENDXKQ Run BLAST on NCBI transcript from alignment at sc0001328:33455..34416 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035548 ID=TCONS_00035548|Name=TCONS_00035548|organism=Clytia hemisphaerica|type=transcript|length=962bp|location=Sequence derived from alignment at sc0001328:33455..34416 (Clytia hemisphaerica)
GTTGGAGTTATCCTTGTTGGTCTGGTAATGGTCGGAATGAAACAATGAGT
CAAATTGGAGCTAAGGAAATCATCAATATTTTGCTTAGATTCAGACAATA
ATAGGTCGTAGTTGAAATCACCAAAAATAATTGCTTTTTTATTCTCTGAT
GTAATTTTGTCAAGAAGATCAGTGTAAAGAGATATAAAGTTTTCAGAATC
AGCACTTGGGTGTTTATATATGCATGCAACAATGAAGTTTTTATCATTCT
CATACACAACCTCTCTGACCACAGATTCAACCTCATTGTTTTNTATCATT
CTCATACCACATATCACTCTCTGACCACAGATTCAACCTCATTGTTTTTG
TATAAGGTAAGATCATCTCTCGGAGTTGAGTGGAATCCTTTAGAGATATA
GAGTCTGGCCCCCCCCCACGGTTTGAAGTAGTGCAGCAGTCAAAGTGGTG
GTAATTCTTTAACGTGGAGGagttttttgcttttatttcaTCTTTGAATC
CAGTCTCAGTAATGCCAATAAAATTGAAAGGGATGGAGCAATTTTCAAGA
GTTATTAAAAGTTCATCGAAGTGAAGTTTTAGTGATGCAATGTTTAGATG
GAGTACAGAAATACAAGggttatttttgttaaatttctcATTTACTTCAC
TTATAGTTAGATAAGGACAGTCAGCAGTCAATGAATCATCCTGGTCTAGG
GCATCCTCTATATCTCTGTAGAATTGGACGTTAATATCGTTATCAGGGtc
taaaaagaaatcacaattCTTACCTTGTAGAGTTAATTTAAGGTCTTCAT
GTGTTATGTTTCCAAAAGGTACTATATGATTGAAGCAACGTTGACAAAAC
CATGGATTTTCCTCAAGTTTGAGCTGCTCATAGACATCGGGAGGTGTATT
GTTGCACTTGATATGGATCCAAAGATTACATAAGTCACACCAAACTGCTT
TATGGTTCTTAG Coding sequence (CDS) from alignment at sc0001328:33455..34416 >TCONS_00035548 ID=TCONS_00035548|Name=TCONS_00035548|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0001328:33455..34416 (Clytia hemisphaerica)
TCATTGTTTTNTATCATTCTCATACCACATATCACTCTCTGACCACAGAT
TCAACCTCATTGTTTTTGTATAAGGTAAGATCATCTCTCGGAGTTGAGTG
GAATCCTTTAGAGATATAGAGTCTGGCCCCCCCCCACGGTTTGAAGTAGT
GCAGCAGTCAAAGTGGTGGTAATTCTTTAACGTGGAGGagttttttgctt
ttatttcaTCTTTGAATCCAGTCTCAGTAATGCCAATAAAATTGAAAGGG
ATGGAGCAATTTTCAAGAGTTATTAAAAGTTCATCGAAGTGAAGTTTTAG
TGATGCAATGTTTAGATGGAGTACAGAAATACAAGggttatttttgttaa
atttctcATTTACTTCACTTATAGTTAGATAAGGACAGTCAGCAGTCAAT
GAATCATCCTGGTCTAGGGCATCCTCTATATCTCTGTAGAATTGGACGTT
AATATCGTTATCAGGGtctaaaaagaaatcacaattCTTACCTTGTAGAG
TTAATTTAAGGTCTTCATGTGTTATGTTTCCAAAAGGTACTATATGATTG
AAGCAACGTTGACAAAACCATGGATTTTCCTCAAGTTTGAGCTGCTCATA
GACATCGGGAGGTGTATTGTTGCACTTGATATGGATCCAAAGATTACATA
AGTCACACCAAACTGCTTTATGGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035548-exon-sc0001328-1491911889:33455..34416 | TCONS_00035548-exon-sc0001328-1491911889:33455..34416 | Clytia hemisphaerica | exon |
| TCONS_00035548-exon-sc0001328-1510915933:33455..34416 | TCONS_00035548-exon-sc0001328-1510915933:33455..34416 | Clytia hemisphaerica | exon |
| TCONS_00035548-exon-sc0001328-1575043694:33455..34416 | TCONS_00035548-exon-sc0001328-1575043694:33455..34416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001328 | supercontig | sc0001328:33455..34416 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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