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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035546 ID=TCONS_00035546|Name=TCONS_00035546|organism=Clytia hemisphaerica|type=transcript|length=1767bp
CGTATAAGAAATACTTGTTTTCCTAATTTATAAAAACACATTGCGAAAAC
CTGATTTCACAAATAAAACGAAAAACTAGGccttaaaagttttattttag
cAGCATTAAAGAGGAGATTTTTATTTCGATAAACGCCTTGACAGGTTATT
CAATTGCGACATCAAACGCGCAACAACGGACGAAAATTGTCagactttga
aaaataattttcgattGTGTAAAATCGTAAAATACAGTATATATAGTGAA
ATATATAGCTGTATTGGAAACGGGATGTTTTTGAAACCGTTGCATCATGT
CAACAGATCTGAGAGAACAACAGATCTATTGTACAACATCAGGATCTGGC
GGGAGGTATTCCGTCGGGAACCGCGAAGGCAGCCATCAACGAACAGAGAG
CACAGCTGGATTTCAACCTGCTCCATCAAGCCTGACCGTAACTTAACCAA
CCGAGGGCAAGTGAAGTTGAAAACTTGCTTAATGACTTGCTGTGAAGGAA
AAGCACGGCCAACCCCGACCTCACACGCGTCTTGTTTTTCGTCACGTTCA
GGCGGCGTTTAGTCTGTTTTTAGAGTAAACATATGCCTGACTAACCAGAA
TCCTAATTTCATTAAACTCGGTTTGGATGCTGACATGAATGAATTCATTG
TATTGGTGTATAAATGTTAAAATTTCAAATCAATCGAATTCGGACTCGAA
ATTAATAGACCTGTCATGGTAAAACCTAACACATCATTTATTAATGCAAT
TGCACGAACATGTCCAAAACGAAACCTGAAAGCAGTGGAAAAGGCGCACT
AATGTCAAGCGATCTTTTACAAATGATCGCACAATAATAAATATAGAAAG
CTATATACAAAATATTAATACCTTATTCGAAGAAATTTTGGCTGGAAAAA
AATTTGACGGATTTGCCTTAAATCCGCGAAACTAAGTTCCCGCCAAATTT
AATTTTATTCGCCATCCGCCGAATTAAATTCTCGCCAAAATTTCTTCGAA
TAAGGTACTTTACAAAATCTACTCTATAACAGGAGGCACAGCAtcgaaat
taaaagaaaaacttggtCGGTCAAAATCGACCAAAAGTAAATCGTTATTT
CCGTTGTAAACAATCACTTTCCGTCGAACCACACTTATCTGAACAACTTT
ACTATTTGCAGTCGGTTGTAAAACCTTGAAACCCTTGATCGTCATGCCAG
TGAAATTGTACGTTTGTAACCGAACGAATTTGGCTACCCTTGTAAACATA
AATTCGTCTATCTTACCAACCACTCCATCAGCGAGACAAACGAATGTTCC
GATCTTTAAAACCGATTGTTGGTTGAATAAGTAACATGATCGGAATGATT
GGTACACGTCCTCGTCATCTGTTTCGAGTAGCCTCAATGTCTCCTTAAGA
TTTTCATCTACGCAATGAACGTTATCTAACGTGAGGGTGAGCGCTCCAAT
GTAAAAAACAGGGTGCTGAGCATCACTGTGGTCAATTGCTCCTTGGAGAC
TTGAAACGAGCTGAAATAgaatcagtttgatcaatcttaaatatttttca
aacaaacgttgaatccaatgaagtataagcccgaagggttaccttaagtg
gataaattgtGGCGGGggttaaatttggcgaatttggccaaaatttccaa
attcggcaattcgccaaacaaatccccaccaaatttaacaaaaatagaat
tatgtgaaaaatcacagctttttagtatttttttgagtaattttcaccca
tttcagtgtgacaaaat Run BLAST on NCBI transcript from alignment at sc0001328:9282..11048 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035546 ID=TCONS_00035546|Name=TCONS_00035546|organism=Clytia hemisphaerica|type=transcript|length=1767bp|location=Sequence derived from alignment at sc0001328:9282..11048 (Clytia hemisphaerica)
attttgtcacactgaaatgggtgaaaattactcaaaaaaatactaaaaag
ctgtgatttttcacataattctatttttgttaaatttggtggggatttgt
ttggcgaattgccgaatttggaaattttggccaaattcgccaaatttaac
cCCCGCCacaatttatccacttaaggtaacccttcgggcttatacttcat
tggattcaacgtttgtttgaaaaatatttaagattgatcaaactgattcT
ATTTCAGCTCGTTTCAAGTCTCCAAGGAGCAATTGACCACAGTGATGCTC
AGCACCCTGTTTTTTACATTGGAGCGCTCACCCTCACGTTAGATAACGTT
CATTGCGTAGATGAAAATCTTAAGGAGACATTGAGGCTACTCGAAACAGA
TGACGAGGACGTGTACCAATCATTCCGATCATGTTACTTATTCAACCAAC
AATCGGTTTTAAAGATCGGAACATTCGTTTGTCTCGCTGATGGAGTGGTT
GGTAAGATAGACGAATTTATGTTTACAAGGGTAGCCAAATTCGTTCGGTT
ACAAACGTACAATTTCACTGGCATGACGATCAAGGGTTTCAAGGTTTTAC
AACCGACTGCAAATAGTAAAGTTGTTCAGATAAGTGTGGTTCGACGGAAA
GTGATTGTTTACAACGGAAATAACGATTTACTTTTGGTCGATTTTGACCG
accaagtttttcttttaatttcgaTGCTGTGCCTCCTGTTATAGAGTAGA
TTTTGTAAAGTACCTTATTCGAAGAAATTTTGGCGAGAATTTAATTCGGC
GGATGGCGAATAAAATTAAATTTGGCGGGAACTTAGTTTCGCGGATTTAA
GGCAAATCCGTCAAATTTTTTTCCAGCCAAAATTTCTTCGAATAAGGTAT
TAATATTTTGTATATAGCTTTCTATATTTATTATTGTGCGATCATTTGTA
AAAGATCGCTTGACATTAGTGCGCCTTTTCCACTGCTTTCAGGTTTCGTT
TTGGACATGTTCGTGCAATTGCATTAATAAATGATGTGTTAGGTTTTACC
ATGACAGGTCTATTAATTTCGAGTCCGAATTCGATTGATTTGAAATTTTA
ACATTTATACACCAATACAATGAATTCATTCATGTCAGCATCCAAACCGA
GTTTAATGAAATTAGGATTCTGGTTAGTCAGGCATATGTTTACTCTAAAA
ACAGACTAAACGCCGCCTGAACGTGACGAAAAACAAGACGCGTGTGAGGT
CGGGGTTGGCCGTGCTTTTCCTTCACAGCAAGTCATTAAGCAAGTTTTCA
ACTTCACTTGCCCTCGGTTGGTTAAGTTACGGTCAGGCTTGATGGAGCAG
GTTGAAATCCAGCTGTGCTCTCTGTTCGTTGATGGCTGCCTTCGCGGTTC
CCGACGGAATACCTCCCGCCAGATCCTGATGTTGTACAATAGATCTGTTG
TTCTCTCAGATCTGTTGACATGATGCAACGGTTTCAAAAACATCCCGTTT
CCAATACAGCTATATATTTCACTATATATACTGTATTTTACGATTTTACA
CaatcgaaaattatttttcaaagtctGACAATTTTCGTCCGTTGTTGCGC
GTTTGATGTCGCAATTGAATAACCTGTCAAGGCGTTTATCGAAATAAAAA
TCTCCTCTTTAATGCTgctaaaataaaacttttaaggCCTAGTTTTTCGT
TTTATTTGTGAAATCAGGTTTTCGCAATGTGTTTTTATAAATTAGGAAAA
CAAGTATTTCTTATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035546-exon-sc0001328-1491911889:9282..11048 | TCONS_00035546-exon-sc0001328-1491911889:9282..11048 | Clytia hemisphaerica | exon |
| TCONS_00035546-exon-sc0001328-1510915933:9282..11048 | TCONS_00035546-exon-sc0001328-1510915933:9282..11048 | Clytia hemisphaerica | exon |
| TCONS_00035546-exon-sc0001328-1575043694:9282..11048 | TCONS_00035546-exon-sc0001328-1575043694:9282..11048 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001328 | supercontig | sc0001328:9282..11048 . |
Blast
The following BLAST results are available for this feature:
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