TCONS_00035545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035545
Unique NameTCONS_00035545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035545 ID=TCONS_00035545|Name=TCONS_00035545|organism=Clytia hemisphaerica|type=transcript|length=3582bp
TTTCAAATTCATGGCAATTTCTGGCACTTGAATGAACAAACTGAGATATT
CACAAAATAAAATGAGCTGAAAGCTTTCAAACCTTTACACTTATCTACAC
GGCAACCATATGTCCCCCTGCAAGAAAACTTGCCAATTTGACACTGCGCT
GGATAGTCACCTGTCCAACAAATTAACAAACATCTGATTGTGCAATTTCC
AGCCTTCAGGTTACCAACATCTATTGGATATTTAACTTCCAGTCCTAAAT
GTGagatttataagaaaatttaggTGAGTGAAGTAGGTGAGTGAAGTAGG
TGAGTATAATCAGTTGGTGACATGTGAGAACGAaagtttttaaatatctt
tagtGTCCAATTATACTTTGGGTAAGATAATATTTTCTCCTGAGCTGGGT
GGTAAGGTATAATAAACTGCTAAATGAGTAATGTTGGTACTGGTTATTTT
CATAATGATTTTACAGTTGAACTGTATCTCAATAACAAAACAGCAAAAGG
TAGTATAGTATAATTTATAATATGCCTCAAAAGTAGACTTACCATCAATA
AAAAGTTCTTCCAACTCTGTAATGAGTGGTTCCAAAAATGGATCTAAAGC
ATTTGGTTCTTTATTGGGCAAAGCATGCTCTGGCACAAAGGTTGTGGTGT
AAATGTGGTCATTCTTTGAACGATGAAGCTTCTCCATTGTGGCAATTGAT
ATCTCAATGGAACCTTAATAGTAAAGAAATTGGGAGTTATAATTTTAAGA
CTAGCTAATAGCCAAGCCATGGCGCTCTTGTTGATTGATGGTTTTACTGG
GAATTATTACCTGAAATTGAGATCCTGAAATTGCCCTGTACACACATAAC
TCTTGAGTATCTTTTAGTATAAAATTATATTACATTACACACAAAAAGGG
TTTACTCATGAATTCCTCTCCATGGATAGTTTTTATTGGCTCAAACTAGA
TTAACTATCTGTAGAACATGAAACTTGACTTGTCTAGTAGTCTCAGGTGC
CCAATGCATGTGTCCCCACAATCATTATCCGACTGTTTATTTGAACCCCT
ATGCTTATTAGGCACCTAAAgtaaatggacaaaaaaataactaaaaccTA
CCAGAGCCTCTTCCAGATTTTGGACTCCACCCATCCCAATGGCCAATCAA
AGCAATGTTTCGAGGATCTCCATGTACAAACTTTGGTTGTATTGTCTCTT
CTTTGTAACAATGATAACAAGTTACATCAATTGTTTCACTTTGATTTCCA
TTAAGATTGATATAACTGTGGCAATTGGTACAAATGTGTGGAAGTGGCCA
TCTACAATCAGTGTCCCAGAACCACTGCAATTCTTTGAATCTGGAACCGT
GCCAAATCTCATTTACTGGATAGCTAACTCCTGATTTTCCTAACCACACA
TCTCTATCTCTCCAATGAGCTAACATTTTTTCTGCCATGTCATCCGATAG
AAACCAACGATTTATTTTATCCTTAATAGGAAGATAATATCTATCAACTG
AGGGTGTCACATCACAATGTGGGCATTGCTCATCAATACCAACAACATAG
TGGTGAAGGGGGTGATCGACGCTAAAGCAGACTTTATGGTGAACAGGATC
AATGTAAACGCCCCTACTTTTAAGAAGAGAAGTAGCAGTGACATAAGATG
GTGGCCAATTTTCCATATTGTGAGCATGACTCAAAAGTTCCCCAACATAA
GCCAACAGCTCTTCTGTCATTTTTATTGAGGCATTCATACCAGATGCAAT
GACAAGGCTTCGCATGAGATTTGAGAGTATAAGGTTTTccctgaaaataa
agaagaaaaattttcacacaAAGTGTTTGATGAATTTAATTCTCAGTTTT
GACTTTTCAATATACATATCTTAACCATAACTATAACCTATCACCCTTTG
GTTATCCTAAGTGCCCATTGCCCTGTTTTCAGAGAGACCGATTTGAAATC
TTGTGATAtttgtaccgtaagttggtctaaacACTCtgctttagagatag
gaataataggaaagcttgaatcactgattgaaaaaggatcaTTCCTCTCT
GACatctaagcaaagaaaaacagtttcaacctttctatcaatttcagctg
ataaaaagggtgtcgaaataagaggaggggtgtcaacattagaccaagtt
gcGGTAGTTACAAGCAAAAAGATCTCGATAACAATTTAATTATATGCACG
CTCCAAAGTCATAAAaatccaaatgaattcaatcatgcgtgttttttttt
tacgaaCAACATGAAAACAGTTTGAGAAAAGGCTAGATTGTATGATGGAA
GGTTAGTTGATTTTTTTACTGCTCAATAAATGACAAAGACATGAAGGATT
AAATTTAAAACCTATACTGACGACATACGGTACCAAAATCGGCAagcagt
ctgggaaatcctctcaattgcacgcttatgttccgaggccgtaagcgcgc
aatcgcacggttatcaaaatggcagaatttttaagcgtgtaattacacgc
ttatcgaaattgttctgaaacgggcggtaagcgttaagcaagattgacgg
gtgacggcttttgcggtaagcgtgtaattgcacgctttaaaatttcctat
atttttcacatgtaattccttccgaaagctctgttgaatttcaaaagcct
agggcagttttactcaaaatttatcgtagaagaagattcgtaaaaatgga
ttgcccgttaaaccatgccttcgcctgaattagagaattctgaacccctt
gaaatccctaagcaatttcaaccagGGCGGGAtcgggcgtaaattataac
catgcaattacgggcttacgccctcggaacataagcatgcaattgagagg
atttcccagactgataTTCCTGTGGTATATCCGGACTCTTAAACACTCTT
AACTGGAAGAGCTTTATGCAAAATGTGGGTGTGAAATTTAAATTACCTGT
CATTATTAGATTGATCCAATTCATTTAGAGGAACAGAGAAGTCACCATCA
TCTCCATCATCATGAGAAGGTCCTGCTGCTGCTACATGGTTATTGTGACG
GTACATTGAAACATCGATACTAGTATCTATATTGTTATTCATAATCATGC
TGCCTTGACAGTTGTTCGAGTCATCTTGCAATATGCCTGTCAATGTGCTT
GGTGAAACCTCCTGCTGCTGAAGTGACAGTGTATTTGAGTAGAGTGATTG
TGTGTGATTAAGTGTTCGGTGTGTAAATGTTTTGGTTGAGAGCTGAGTTT
TCGTCTGAATTATTGCTGTCATTAGCATTAGACTCATCCTGAACAGAATC
ATTATTGCCAATTACTTGATTTGATCCTTCTTCTATTTTGGCAAGCATTA
AATATTGTTTGCAATGTGCAATTTCTGTGTTTCGATGAACAGCTTTTCCT
TTGCAAGACGGACAAGGACAGTGTGTGTGTGGTTGAATAGTTGATTTCTC
ACACCGACAGTTTGCAACTGACAGTCTAGCCCATTTTGGTTGTGGTTCTT
GCTCACCTTCCATCTTGTAATCTTTAATTCAGCACCATTCAGCCATTTCT
ATCTGTTCTTCTTTGTCTTTGCTTGGTTCTTT
Run BLAST on NCBI

transcript from alignment at sc0001328:4722..8584-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035545 ID=TCONS_00035545|Name=TCONS_00035545|organism=Clytia hemisphaerica|type=transcript|length=3863bp|location=Sequence derived from alignment at sc0001328:4722..8584- (Clytia hemisphaerica)
TTTCAAATTCATGGCAATTTCTGGCACTTGAATGAACAAACTGAGATATT
CACAAAATAAAATGAGCTGAAAGCTTTCAAACCTTTACACTTATCTACAC
GGCAACCATATGTCCCCCTGCAAGAAAACTTGCCAATTTGACACTGCGCT
GGATAGTCACCTGTCCAACAAATTAACAAACATCTGATTGTGCAATTTCC
AGCCTTCAGGTTACCAACATCTATTGGATATTTAACTTCCAGTCCTAAAT
GTGAGATTTATAAGAAAATTTAGGTGAGTGAAGTAGGTGAGTGAAGTAGG
TGAGTATAATCAGTTGGTGACATGTGAGAACGAAAGTTTTTAAATATCTT
TAGTGTCCAATTATACTTTGGGTAAGATAATATTTTCTCCTGAGCTGGGT
GGTAAGGTATAATAAACTGCTAAATGAGTAATGTTGGTACTGGTTATTTT
CATAATGATTTTACAGTTGAACTGTATCTCAATAACAAAACAGCAAAAGG
TAGTATAGTATAATTTATAATATGCCTCAAAAGTAGACTTACCATCAATA
AAAAGTTCTTCCAACTCTGTAATGAGTGGTTCCAAAAATGGATCTAAAGC
ATTTGGTTCTTTATTGGGCAAAGCATGCTCTGGCACAAAGGTTGTGGTGT
AAATGTGGTCATTCTTTGAACGATGAAGCTTCTCCATTGTGGCAATTGAT
ATCTCAATGGAACCTTAATAGTAAAGAAATTGGGAGTTATAATTTTAAGA
CTAGCTAATAGCCAAGCCATGGCGCTCTTGTTGATTGATGGTTTTACTGG
GAATTATTACCTGAAATTGAGATCCTGAAATTGCCCTGTACACACATAAC
TCTTGAGGTTTGAGCAATTATTAGATCTTTTGAATAAAATCCTTTGTATG
TGCCGTGCCATTTACCAAGCTTAGAGAAAATCGATGTCACAAATTTTGTG
ACAAATCTTCCAAGACTTATTTTAAATCTTTGGTGTCCTATTACAATAAA
ATTCCCGTGTATAAAAACATCAACAAGAGTTTTATGGGAAAATTACAGAA
AATTATTCCCAATGTTACATTATATGATGATACAGAATTTTAGCATCATG
TGATTAATATTACAATAATACACACAATAACAAATGAGTATCTTTTAGTA
TAAAATTATATTACATTACACACAAAAAGGGTTTACTCATGAATTCCTCT
CCATGGATAGTTTTTATTGGCTCAAACTAGATTAACTATCTGTAGAACAT
GAAACTTGACTTGTCTAGTAGTCTCAGGTGCCCAATGCATGTGTCCCCAC
AATCATTATCCGACTGTTTATTTGAACCCCTATGCTTATTAGGCACCTAA
AGTAAATGGACAAAAAAATAACTAAAACCTACCAGAGCCTCTTCCAGATT
TTGGACTCCACCCATCCCAATGGCCAATCAAAGCAATGTTTCGAGGATCT
CCATGTACAAACTTTGGTTGTATTGTCTCTTCTTTGTAACAATGATAACA
AGTTACATCAATTGTTTCACTTTGATTTCCATTAAGATTGATATAACTGT
GGCAATTGGTACAAATGTGTGGAAGTGGCCATCTACAATCAGTGTCCCAG
AACCACTGCAATTCTTTGAATCTGGAACCGTGCCAAATCTCATTTACTGG
ATAGCTAACTCCTGATTTTCCTAACCACACATCTCTATCTCTCCAATGAG
CTAACATTTTTTCTGCCATGTCATCCGATAGAAACCAACGATTTATTTTA
TCCTTAATAGGAAGATAATATCTATCAACTGAGGGTGTCACATCACAATG
TGGGCATTGCTCATCAATACCAACAACATAGTGGTGAAGGGGGTGATCGA
CGCTAAAGCAGACTTTATGGTGAACAGGATCAATGTAAACGCCCCTACTT
TTAAGAAGAGAAGTAGCAGTGACATAAGATGGTGGCCAATTTTCCATATT
GTGAGCATGACTCAAAAGTTCCCCAACATAAGCCAACAGCTCTTCTGTCA
TTTTTATTGAGGCATTCATACCAGATGCAATGACAAGGCTTCGCATGAGA
TTTGAGAGTATAAGGTTTTCCCTGAAAATAAAGAAGAAAAATTTTCACAC
AAAGTGTTTGATGAATTTAATTCTCAGTTTTGACTTTTCAATATACATAT
CTTAACCATAACTATAACCTATCACCCTTTGGTTATCCTAAGTGCCCATT
GCCCTGTTTTCAGAGAGACCGATTTGAAATCTTGTGATATTTGTACCGTA
AGTTGGTCTAAACACTCTGCTTTAGAGATAGGAATAATAGGAAAGCTTGA
ATCACTGATTGAAAAAGGATCATTCCTCTCTGACATCTAAGCAAAGAAAA
ACAGTTTCAACCTTTCTATCAATTTCAGCTGATAAAAAGGGTGTCGAAAT
AAGAGGAGGGGTGTCAACATTAGACCAAGTTGCGGTAGTTACAAGCAAAA
AGATCTCGATAACAATTTAATTATATGCACGCTCCAAAGTCATAAAAATC
CAAATGAATTCAATCATGCGTGTTTTTTTTTTACGAACAACATGAAAACA
GTTTGAGAAAAGGCTAGATTGTATGATGGAAGGTTAGTTGATTTTTTTAC
TGCTCAATAAATGACAAAGACATGAAGGATTAAATTTAAAACCTATACTG
ACGACATACGGTACCAAAATCGGCAAGCAGTCTGGGAAATCCTCTCAATT
GCACGCTTATGTTCCGAGGCCGTAAGCGCGCAATCGCACGGTTATCAAAA
TGGCAGAATTTTTAAGCGTGTAATTACACGCTTATCGAAATTGTTCTGAA
ACGGGCGGTAAGCGTTAAGCAAGATTGACGGGTGACGGCTTTTGCGGTAA
GCGTGTAATTGCACGCTTTAAAATTTCCTATATTTTTCACATGTAATTCC
TTCCGAAAGCTCTGTTGAATTTCAAAAGCCTAGGGCAGTTTTACTCAAAA
TTTATCGTAGAAGAAGATTCGTAAAAATGGATTGCCCGTTAAACCATGCC
TTCGCCTGAATTAGAGAATTCTGAACCCCTTGAAATCCCTAAGCAATTTC
AACCAGGGCGGGATCGGGCGTAAATTATAACCATGCAATTACGGGCTTAC
GCCCTCGGAACATAAGCATGCAATTGAGAGGATTTCCCAGACTGATATTC
CTGTGGTATATCCGGACTCTTAAACACTCTTAACTGGAAGAGCTTTATGC
AAAATGTGGGTGTGAAATTTAAATTACCTGTCATTATTAGATTGATCCAA
TTCATTTAGAGGAACAGAGAAGTCACCATCATCTCCATCATCATGAGAAG
GTCCTGCTGCTGCTACATGGTTATTGTGACGGTACATTGAAACATCGATA
CTAGTATCTATATTGTTATTCATAATCATGCTGCCTTGACAGTTGTTCGA
GTCATCTTGCAATATGCCTGTCAATGTGCTTGGTGAAACCTCCTGCTGCT
GAAGTGACAGTGTATTTGAGTAGAGTGATTGTGTGTGATTAAGTGTTCGG
TGTGTAAATGTTTTGGTTGAGAGCTGAGTTTTCGTCTGAATTATTGCTGT
CATTAGCATTAGACTCATCCTGAACAGAATCATTATTGCCAATTACTTGA
TTTGATCCTTCTTCTATTTTGGCAAGCATTAAATATTGTTTGCAATGTGC
AATTTCTGTGTTTCGATGAACAGCTTTTCCTTTGCAAGACGGACAAGGAC
AGTGTGTGTGTGGTTGAATAGTTGATTTCTCACACCGACAGTTTGCAACT
GACAGTCTAGCCCATTTTGGTTGTGGTTCTTGCTCACCTTCCATCTTGTA
ATCTTTAATTCAGCACCATTCAGCCATTTCTATCTGTTCTTCTTTGTCTT
TGCTTGGTTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020799XLOC_020799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035545-exon-sc0001328-1575043694:7728..8584TCONS_00035545-exon-sc0001328-1575043694:7728..8584Clytia hemisphaericaexon
TCONS_00035545-exon-sc0001328-1575043694:4722..7446TCONS_00035545-exon-sc0001328-1575043694:4722..7446Clytia hemisphaericaexon
TCONS_00035545-exon-sc0001328-1510915933:7728..8584TCONS_00035545-exon-sc0001328-1510915933:7728..8584Clytia hemisphaericaexon
TCONS_00035545-exon-sc0001328-1510915933:4722..7446TCONS_00035545-exon-sc0001328-1510915933:4722..7446Clytia hemisphaericaexon
TCONS_00035545-exon-sc0001328-1491911889:7728..8584TCONS_00035545-exon-sc0001328-1491911889:7728..8584Clytia hemisphaericaexon
TCONS_00035545-exon-sc0001328-1491911889:4722..7446TCONS_00035545-exon-sc0001328-1491911889:4722..7446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001328supercontigsc0001328:4722..8584 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35531	1.26974	1.85467	1.35173	1.68355	1.35238	1.30959	1.39668	1.121	1.01048	1.40399	1.25291	0.799249	1.08922	0.956728	0.956054	1.02273	1.04219	1.55644	1.38394	1.57492	2.29182	0.500919	1.05117	0.525925	0.760861	1.82915	2.14776	1.51468	1.1872
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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