TCONS_00035544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035544
Unique NameTCONS_00035544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035544 ID=TCONS_00035544|Name=TCONS_00035544|organism=Clytia hemisphaerica|type=transcript|length=516bp
ATAATTTTGTCTCTAGGCCACGGTTTGAAATCTCCAAACAGCGGCATCAA
AGCACCAAGGGTTACGGAAAAAATTTATGCACGTGTACTGTACAAACAGT
TTGTCAGATCTATGAGGAGTAAAAAAGTGattttcagtgattttcaaACG
TATAAAATCTGGTGAAATGGAGCCAGGAGTAGAAGACTTTACATCAGATG
AATTAGTAATGTATCTACGTTCACTCTTTCCTCTGGAGATGGCGAACAAG
ATTATTGcTTACGACTTGAGTGGTAAACACCTTCAAGTTCTTGTGGGATC
TGCCAATCAattcgccattttgaaagaaatgaagTTGAGCATCAAAGAAA
TACTTGAATTTCAAGTCAAACTCCCTCCTGCACTGACCAACTCAGAAACA
AAAGAGTCGACTCCATCCAAGGCAACAGAACTTGAtgtttttttgaagaa
tatgaGGTTAGTTTGTTGTTTACCTCATTAGATAGTTCTTACTATCAGGG
TGCCTAATAAATTGAG
Run BLAST on NCBI

protein sequence of TCONS_00035544-protein

>TCONS_00035544-protein ID=TCONS_00035544-protein|Name=TCONS_00035544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MEPGVEDFTSDELVMYLRSLFPLEMANKIIAYDLSGKHLQVLVGSANQFA
ILKEMKLSIKEILEFQVKLPPALTNSETKESTPSKATELDVFLKNMRLVC
CLPH
Run BLAST on NCBI

transcript from alignment at sc0001328:3502..4401-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035544 ID=TCONS_00035544|Name=TCONS_00035544|organism=Clytia hemisphaerica|type=transcript|length=900bp|location=Sequence derived from alignment at sc0001328:3502..4401- (Clytia hemisphaerica)
ATAATTTTGTCTCTAGGCCACGGTTTGAAATCTCCAAACAGCGGCATCAA
AGCACCAAGGGTTACGGAAAAAATTTATGCACGTGTACTGTACAAACAGT
TTGTCAGATCTATGAGGAGTAAAAAAGTGATTTTCAGTGATTTTCAAACG
TATAAAATCTGGTGAAATGGAGCCAGGAGTAGAAGACTTTACATCAGATG
AATTAGTAATGTATCTACGTTCACTCTTTCCTCTGGAGATGGCGAACAAG
ATTATTGGTGAGTAAATCATATCTGAATTGAAACTTTAATAAACTTTATT
ATCATATTGAAACATTATTGTAGACAGGCTACGTACGTGGGACTCATTTT
TCAAACAATTTTGGCAAAATTTGCAAAAAAGTGACCCTGTATGGCCACCT
GAGGGACTTATTTTTCTATTTTGGTGTTTAGCGACCCTGTGTGGGGCTGG
TGGAGGTGAAAAAAAAGTACCTTGACCATAGGAATATCCCTGCACAAAGT
TTCAGAAAGGTGCAAGTTCAAGATTTTGAGTCAAGGGTCCATGAAAAAAA
AATTACCAAAGCAACTGATTTATTTATATATATGAATTGGGCCATTTCAA
AATTTTGATAGCATGTGTTTATTAAAAATTTTCTATTTCAGCTTACGACT
TGAGTGGTAAACACCTTCAAGTTCTTGTGGGATCTGCCAATCAATTCGCC
ATTTTGAAAGAAATGAAGTTGAGCATCAAAGAAATACTTGAATTTCAAGT
CAAACTCCCTCCTGCACTGACCAACTCAGAAACAAAAGAGTCGACTCCAT
CCAAGGCAACAGAACTTGATGTTTTTTTGAAGAATATGAGGTTAGTTTGT
TGTTTACCTCATTAGATAGTTCTTACTATCAGGGTGCCTAATAAATTGAG

Coding sequence (CDS) from alignment at sc0001328:3502..4401-

>TCONS_00035544 ID=TCONS_00035544|Name=TCONS_00035544|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0001328:3502..4401- (Clytia hemisphaerica)
CTTACGACTTGAGTGGTAAACACCTTCAAGTTCTTGTGGGATCTGCCAAT
CAATTCGCCATTTTGAAAGAAATGAAGTTGAGCATCAAAGAAATACTTGA
ATTTCAAGTCAAACTCCCTCCTGCACTGACCAACTCAGAAACAAAAGAGT
CGACTCCATCCAAGGCAACAGAACTTGATGTTTTTTTGAAGAATATGAGG
TTAGTTTGTTGTTTACCTCATTAGATGGAGCCAGGAGTAGAAGACTTTAC
ATCAGATGAATTAGTAATGTATCTACGTTCACTCTTTCCTCTGGAGATGG
CGAACAAGATTATTGCTTACGACTTGAGTGGTAAACACCTTCAAGTTCTT
GTGGGATCTGCCAATCAATTCGCCATTTTGAAAGAAATGAAGTTGAGCAT
CAAAGAAATACTTGAATTTCAAGTCAAACTCCCTCCTGCACTGACCAACT
CAGAAACAAAAGAGTCGACTCCATCCAAGGCAACAGAACTTGATGTTTTT
TTGAAGAATATGAGGTTAGTTTGTTGTTTACCTCATTAGATGGAGCCAGG
AGTAGAAGACTTTACATCAGATGAATTAGTAATGTATCTACGTTCACTCT
TTCCTCTGGAGATGGCGAACAAGATTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020798XLOC_020798Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035544-proteinTCONS_00035544-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035544-exon-sc0001328-1575043694:4145..4401TCONS_00035544-exon-sc0001328-1575043694:4145..4401Clytia hemisphaericaexon
TCONS_00035544-exon-sc0001328-1575043694:3502..3760TCONS_00035544-exon-sc0001328-1575043694:3502..3760Clytia hemisphaericaexon
TCONS_00035544-exon-sc0001328-1510915933:4145..4401TCONS_00035544-exon-sc0001328-1510915933:4145..4401Clytia hemisphaericaexon
TCONS_00035544-exon-sc0001328-1510915933:3502..3760TCONS_00035544-exon-sc0001328-1510915933:3502..3760Clytia hemisphaericaexon
TCONS_00035544-exon-sc0001328-1491911889:4145..4401TCONS_00035544-exon-sc0001328-1491911889:4145..4401Clytia hemisphaericaexon
TCONS_00035544-exon-sc0001328-1491911889:3502..3760TCONS_00035544-exon-sc0001328-1491911889:3502..3760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001328supercontigsc0001328:3502..4401 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.849	1.46499	2.22438	0.256025	8.72719	7.38894	2.82291	4.31189	2.04503	3.37747	3.74658	1.38535	1.46029	0.558718	1.70613	2.88725	2.60257	2.22296	2.82545	2.82808	1.89945	3.26995	1.45752	1.3251	0.992596	0.885868	4.43686	3.55135	3.7197	2.87501
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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