TCONS_00035543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035543
Unique NameTCONS_00035543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035543 ID=TCONS_00035543|Name=TCONS_00035543|organism=Clytia hemisphaerica|type=transcript|length=354bp
ATTTTTGTGAATGGTGGTCAGACTCGGCGAATGATTGAGTGGTCAAAGCT
GTATATTCATTAGAAAAACCATTCTGAATACCTTGTGCGAATAATTTTGT
GGAAACTATTTGACAAATTTGttaggtttaaaatcttcactTTGGTTTAA
TAATCACATAAACCTTCATTCACAGAGACAAGATCAAGTCATAACATCTA
TCCCAGAGACAGAAGACATAAGGGAGAATCCTTTTTCACAAATGATACAG
ATTCAAGATGAAATAGTGATCCCAGAAACGGAGATGCTGGAAGACAAAAA
TAAAAGCCCATTTGAGGACAACGAAGAtacaaacagaaagaaaaatcaag
aTAG
Run BLAST on NCBI

transcript from alignment at sc0001328:287..1802-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035543 ID=TCONS_00035543|Name=TCONS_00035543|organism=Clytia hemisphaerica|type=transcript|length=1516bp|location=Sequence derived from alignment at sc0001328:287..1802- (Clytia hemisphaerica)
ATTTTTGTGAATGGTGGTCAGACTCGGCGAATGATTGAGTGGTCAAAGCT
GTATATTCATTAGAAAAACCATTCTGAATACCTTGTGCGAATAATTTTGT
GGAAACTATTTGACAAATTTGTTAGGTTTAAAATCTTCACTTTGGTTTAA
TAATCACATAAACCTTCATTCACAGAGACAAGATCAAGTCATAACATCTA
TCCCAGAGACAGAAGACATAAGGGAGAATCCTTTTTCACAAATGATACAG
GTTTCATTTTGCATGTTTTATTATTTGATAAGGCAAGACTAATTTAATTT
GTTGTTTTACGGGCCAAGCTAACATAAAAAGAGGGTCAGTCGATTGGCGA
AGAAATTAAAATTAAAATTTCACCTATAAAATCTCCTAAAAAGGAAACAA
AAACTAATTCATCTCGACAAAAATGTGGAATAGAAAATAAAATGACCCAA
AAAGCTCGAATTCTTGGAAAAACTACCAAATTTTTTAAAATCTGACAGTC
TGTAAAGCAATGAAAAGAATGATGTACTTTAAAAATCAACTTTATTTTTA
TTTCAATTTTTGAAATTTCAGGGTTGGTCGGGCCCTTAAAACAACTAATC
AAATTGGTTTTGCCTAATTACAACAATGTTCATCATTGAAACAATTTATC
GACTGCATGTGAATATTCTTCTATAGAAATTATTTCCATTCCACAACTTT
ACAGGTCACTCATTGTAGCAATTGAATATTGAATCAGGGATTTATTATTA
GATTCATGATTATAAACTGCTCCAGGGGGGATTGAAATGATTGACTTTTT
TATCACTATAAAATCAATAAAATCGAATAAAAATTTCTAATACCTTAATT
GTTTCAATTTTTCATCTTTCATAAGGAAATTACTACATTTTAAGAACCAT
TTTAGGTACTCAAATTTATATGACAGCCGAAAAATCAGCTGATTACTTTG
AAGTGATTTCATAAAATTCACATGGCCCACCACCACTGCACTAACCAACA
TGTCTCATACTAACTGCTCCACACCCTGACTGTTCGTATTTCCATTATGT
ATCAACATGAAACTTTTTATTCACAGATTCAAGATGAAATAGTGATCCCA
GAAACGGAGATGCTGGAAGACAAAAATAAAAGCCCATTTGAGGTATGTTT
TTTGTATATACAGCACCTGTTCCTTATCCCCTTCCCTATTCCTTATAGAA
ATCTGTTGATTCTCTTTTGCTTGAACTGTGAAATGAAATGGAGTTCATTT
TTAGTTACAATTTACAGGTATGCACTATAATTGTAGTGGCACAAATCTAC
TTGTAATAGACAGACAATTCATGATCTTTTTGTTGTTTTTCTTATTCAGA
NAGTTCATTTTTAGTTCACGAACATGAAGATGGGTACAATTTACAGGTAT
GCACTATAATTGTAGTGGCACAAATCTACCTATAATAGACAGACAATTCA
TGATCTTTTTGTTGTTTTTCTTATTCAGGACAACGAAGATACAAACAGAA
AGAAAAATCAAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020797XLOC_020797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035543-exon-sc0001328-1575043694:1553..1802TCONS_00035543-exon-sc0001328-1575043694:1553..1802Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1575043694:661..726TCONS_00035543-exon-sc0001328-1575043694:661..726Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1575043694:287..324TCONS_00035543-exon-sc0001328-1575043694:287..324Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1510915933:1553..1802TCONS_00035543-exon-sc0001328-1510915933:1553..1802Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1510915933:661..726TCONS_00035543-exon-sc0001328-1510915933:661..726Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1510915933:287..324TCONS_00035543-exon-sc0001328-1510915933:287..324Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1491911889:1553..1802TCONS_00035543-exon-sc0001328-1491911889:1553..1802Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1491911889:661..726TCONS_00035543-exon-sc0001328-1491911889:661..726Clytia hemisphaericaexon
TCONS_00035543-exon-sc0001328-1491911889:287..324TCONS_00035543-exon-sc0001328-1491911889:287..324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001328supercontigsc0001328:287..1802 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95739	1.93679	0	0.271033	17.6077	10.0243	7.59783	6.74771	1.12711	1.89234	2.21192	2.43403	1.09591	0.675966	1.93319	2.20649	0.748866	0.487553	2.16702	1.63302	1.62205	2.22525	1.12215	1.44333	6.52262	1.96778	3.92913	1.38094	2.98726	2.46367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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