TCONS_00035532 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035532
Unique NameTCONS_00035532
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035532 ID=TCONS_00035532|Name=TCONS_00035532|organism=Clytia hemisphaerica|type=transcript|length=672bp
CTAAAATAGAACGTAAGTTTGGCTCAACCTTTCTTGTTGAATTTTTGCAC
ATTTGCGTCATAATGGGAAGTAAAAAATTCTACCCTCATTTCATTCATTG
ATTCATTGTGTTTTACCTATTGTCTGAAGAAATGTCCGTCGACCATGCTT
TTATCATtctgaaaaacaaacaaagaaaaactttttgaagacaaaagaaa
aacaccAACAGAAACAATGGAAAATGGAAAACGAACAATACATCATACAA
CTTAGTCCCCAAACCTTCGGGAGAAAAACAACTTGAAGGACTGAATGAGA
AGAATCTCACCAGTCTGGGAAAGAGGTTTATATAATCCCGTATAAGTGTT
CAGACCTCGTGTGTTTTTGTTACAACATTTTTGACATCATCGACTACGTA
GTCATGTCGGACAATACGACCGTGATATTAAAACACGGCCAGACACCTTC
CACGAGATTGTGTCAGTATCGACGACGTTACTGCTTTGTTTATCCTGCAA
CGCAAGGGCGTTTACCTCAAGATTCGCGACAATGGTGCGTGGAGAGAATC
ACTCCCAGATAATGATGGCATTTTCTACACAGGAGATGGCGAATTTTGTT
ACGTAGTAagaatttaatattttatttatttttattcctCTTCCACAGAT
ATTGCTTTACCTGTTTCGAAAT
Run BLAST on NCBI

transcript from alignment at sc0001327:18420..19091

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035532 ID=TCONS_00035532|Name=TCONS_00035532|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at sc0001327:18420..19091 (Clytia hemisphaerica)
ATTTCGAAACAGGTAAAGCAATATCTGTGGAAGaggaataaaaataaata
aaatattaaattctTACTACGTAACAAAATTCGCCATCTCCTGTGTAGAA
AATGCCATCATTATCTGGGAGTGATTCTCTCCACGCACCATTGTCGCGAA
TCTTGAGGTAAACGCCCTTGCGTTGCAGGATAAACAAAGCAGTAACGTCG
TCGATACTGACACAATCTCGTGGAAGGTGTCTGGCCGTGTTTTAATATCA
CGGTCGTATTGTCCGACATGACTACGTAGTCGATGATGTCAAAAATGTTG
TAACAAAAACACACGAGGTCTGAACACTTATACGGGATTATATAAACCTC
TTTCCCAGACTGGTGAGATTCTTCTCATTCAGTCCTTCAAGTTGTTTTTC
TCCCGAAGGTTTGGGGACTAAGTTGTATGATGTATTGTTCGTTTTCCATT
TTCCATTGTTTCTGTTggtgtttttcttttgtcttcaaaaagtttttctt
tgtttgtttttcagaATGATAAAAGCATGGTCGACGGACATTTCTTCAGA
CAATAGGTAAAACACAATGAATCAATGAATGAAATGAGGGTAGAATTTTT
TACTTCCCATTATGACGCAAATGTGCAAAAATTCAACAAGAAAGGTTGAG
CCAAACTTACGTTCTATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020789XLOC_020789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035532-exon-sc0001327-1491911889:18420..19091TCONS_00035532-exon-sc0001327-1491911889:18420..19091Clytia hemisphaericaexon
TCONS_00035532-exon-sc0001327-1510915933:18420..19091TCONS_00035532-exon-sc0001327-1510915933:18420..19091Clytia hemisphaericaexon
TCONS_00035532-exon-sc0001327-1575043694:18420..19091TCONS_00035532-exon-sc0001327-1575043694:18420..19091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001327supercontigsc0001327:18420..19091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0867597	0	0.206668	0	0	0	0.0645711	0	0.155264	0	0	0.211696	0.0435107	0	0	0	0	0	0	0	0	0	0	0.0734238	0	0	0	0.0866511
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035532 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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