TCONS_00035527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035527
Unique NameTCONS_00035527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035527 ID=TCONS_00035527|Name=TCONS_00035527|organism=Clytia hemisphaerica|type=transcript|length=720bp
GTCATGGCGTCACGGAGAGGACAATACATTGACTACATGGAAAAAATATT
AGAAGTTGCTAAGGACAAGCTGCAAAGACCACCACTTGGTCCTCTTCATC
GCTATGTGGACAAGTCTCTATTGGGAAAACACTTCAACTACTACATTGTA
CACAATGGAGTTGACTTTGGTATCATTCTTGAAGAAGCTGAAAAACTTAA
TGTATACCAGCCTAATATGATCATTTTCGACCATGATGTTGAGTTGTCCC
CTGACTGGTTTACGTTGTTTCCTGGTGTGGAATGCCCGCCTGCTGTTGGA
AATGTCACGCTTCAATATTTACAAGACCCTACATCCCATatgatatgatt
ttttttctaaattttttctgACAGGACACTTCCCCTTACATAGATACCTA
TAAGAAGACtttgttttccttttctctGCATAAGTAGTAAATAATGCAAC
CCTGTCAACGTGTACCACtattagggttagggttagctCTGGTGCAtgcc
cagacggtgtcaatcgaacaacttcgaacaaaaatcgcaatcgaaccaat
cgaacgtaatcgaacgcgatcgaataattgtgattcgattgtcgaacgta
atcgaatctcaattgaacggctgattcctgggtaatattcgattgtgttc
gattgcattcgagtaaggttagattggttcgattgatagttgactatgtg
cGATTGGTTTGATTTGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00035527-protein

>TCONS_00035527-protein ID=TCONS_00035527-protein|Name=TCONS_00035527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
VMASRRGQYIDYMEKILEVAKDKLQRPPLGPLHRYVDKSLLGKHFNYYIV
HNGVDFGIILEEAEKLNVYQPNMIIFDHDVELSPDWFTLFPGVECPPAVG
NVTLQYLQDPTSHMI
Run BLAST on NCBI

transcript from alignment at sc0001327:17043..17954-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035527 ID=TCONS_00035527|Name=TCONS_00035527|organism=Clytia hemisphaerica|type=transcript|length=912bp|location=Sequence derived from alignment at sc0001327:17043..17954- (Clytia hemisphaerica)
GTCATGGCGTCACGGAGAGGACAATACATTGACTACATGGAAAAAATATT
AGAAGTTGCTAAGGACAAGGTACGTCATCATCTAATTATTAGACATGAGT
AACTTAACTTAATTCCGAGAAATTATCAGCCTTTCTGAAAATAATGTCTT
ATTTCATTCATATACAAAATTTAAGGTCGAGCTGCTGCCAAGTACAGTGT
GCACATTTGTCTAAAGACATTGTTCATTGTCATATTTTTAAATGGAAAAA
TTCTTTTACAGCTGCAAAGACCACCACTTGGTCCTCTTCATCGCTATGTG
GACAAGTCTCTATTGGGAAAACACTTCAACTACTACATTGTACACAATGG
AGTTGACTTTGGTATCATTCTTGAAGAAGCTGAAAAACTTAATGTATACC
AGCCTAATATGATCATTTTCGACCATGATGTTGAGTTGTCCCCTGACTGG
TTTACGTTGTTTCCTGGTGTGGAATGCCCGCCTGCTGTTGGAAATGTCAC
GCTTCAATATTTACAAGACCCTACATCCCATATGATATGATTTTTTTTCT
AAATTTTTTCTGACAGGACACTTCCCCTTACATAGATACCTATAAGAAGA
CTTTGTTTTCCTTTTCTCTGCATAAGTAGTAAATAATGCAACCCTGTCAA
CGTGTACCACTATTAGGGTTAGGGTTAGCTCTGGTGCATGCCCAGACGGT
GTCAATCGAACAACTTCGAACAAAAATCGCAATCGAACCAATCGAACGTA
ATCGAACGCGATCGAATAATTGTGATTCGATTGTCGAACGTAATCGAATC
TCAATTGAACGGCTGATTCCTGGGTAATATTCGATTGTGTTCGATTGCAT
TCGAGTAAGGTTAGATTGGTTCGATTGATAGTTGACTATGTGCGATTGGT
TTGATTTGTCAA

Coding sequence (CDS) from alignment at sc0001327:17043..17954-

>TCONS_00035527 ID=TCONS_00035527|Name=TCONS_00035527|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0001327:17043..17954- (Clytia hemisphaerica)
CTGCAAAGACCACCACTTGGTCCTCTTCATCGCTATGTGGACAAGTCTCT
ATTGGGAAAACACTTCAACTACTACATTGTACACAATGGAGTTGACTTTG
GTATCATTCTTGAAGAAGCTGAAAAACTTAATGTATACCAGCCTAATATG
ATCATTTTCGACCATGATGTTGAGTTGTCCCCTGACTGGTTTACGTTGTT
TCCTGGTGTGGAATGCCCGCCTGCTGTTGGAAATGTCACGCTTCAATATT
TACAAGACCCTACATCCCATATGATATGAGTCATGGCGTCACGGAGAGGA
CAATACATTGACTACATGGAAAAAATATTAGAAGTTGCTAAGGACAAGCT
GCAAAGACCACCACTTGGTCCTCTTCATCGCTATGTGGACAAGTCTCTAT
TGGGAAAACACTTCAACTACTACATTGTACACAATGGAGTTGACTTTGGT
ATCATTCTTGAAGAAGCTGAAAAACTTAATGTATACCAGCCTAATATGAT
CATTTTCGACCATGATGTTGAGTTGTCCCCTGACTGGTTTACGTTGTTTC
CTGGTGTGGAATGCCCGCCTGCTGTTGGAAATGTCACGCTTCAATATTTA
CAAGACCCTACATCCCATATGATATGAGTCATGGCGTCACGGAGAGGACA
ATACATTGACTACATGGAAAAAATATTAGAAGTTGCTAAGGACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020784XLOC_020784Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035527-proteinTCONS_00035527-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035527-exon-sc0001327-1575043694:17886..17954TCONS_00035527-exon-sc0001327-1575043694:17886..17954Clytia hemisphaericaexon
TCONS_00035527-exon-sc0001327-1575043694:17043..17693TCONS_00035527-exon-sc0001327-1575043694:17043..17693Clytia hemisphaericaexon
TCONS_00035527-exon-sc0001327-1510915933:17886..17954TCONS_00035527-exon-sc0001327-1510915933:17886..17954Clytia hemisphaericaexon
TCONS_00035527-exon-sc0001327-1510915933:17043..17693TCONS_00035527-exon-sc0001327-1510915933:17043..17693Clytia hemisphaericaexon
TCONS_00035527-exon-sc0001327-1491911889:17886..17954TCONS_00035527-exon-sc0001327-1491911889:17886..17954Clytia hemisphaericaexon
TCONS_00035527-exon-sc0001327-1491911889:17043..17693TCONS_00035527-exon-sc0001327-1491911889:17043..17693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001327supercontigsc0001327:17043..17954 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19247	2.45969	5.16802	6.187	4.37957	2.84669	3.80634	3.9089	3.13297	4.05019	3.8034	3.1659	2.97663	3.29514	5.59822	4.5529	3.48368	3.12671	3.69423	3.3481	2.71575	3.60051	1.30076	1.0837	2.80316	4.78398	2.55952	2.93655	1.43698	0.8155
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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