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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035524 ID=TCONS_00035524|Name=TCONS_00035524|organism=Clytia hemisphaerica|type=transcript|length=897bp
ATATTCTCGAAATGGTAGACAAAGCTGCAAATGGTCAGATGCTGAAGGAA
TTCCGATGCTGAATGATGGAGCTGGATTGTAACCAATTTGACCGTGAAAG
CATCTTCGATAGCTATTTAGAATcgataaattaacctttgtttcAGGATG
TTTTACCTTCTAATGATGTTGATTTTGATATGCAGGATATGCATATGCAG
CACCAGGAGGAGGGGGAAGTTGTTCGAAAAGAAGAAACTGCTAACAATGA
TGATGATAAAGTTGATGATGATTATCAAGATGATAATGATGGCAACAATA
TTAACAATAATGATTATAATCACCACAACAATTATCATAACCAAAATGAC
GATTTTCTTTTGACAAAGGAACCATCTTGGGATAACTTGACTGCAAACAT
AGAAGAACTTCATGAACATGAAATGAGCAAAATGTTTGACACGTTGAATG
TTAATGTTGATGATTGTGACATCAATGAAGAGGACTTCTTTACTGAGACA
AATTCATATCCATACGACGAGCCAAAGCCATTGTGCAGAGGAGTAAATAT
GTCACTTGAAAATTCGCTGCTTCTTCACATGGCATTTTCCAGGAGGCACA
ATCTTACAAAGGCTGCATTGAAAGATCTGTTATCCTTGACATCATTGCAT
TTATGTAAACCAAATGGATTCCCAACAACCGTCGATCAAATGTATAATGT
ACTTGGTTTGCAAGAAAGTGAAGTAACAAATGTATATTACTGCAGTAATT
GTAATATATCGTTGGATAAACCAAGTGACAAATGTATTCATTGTCCAAGT
GAAACAAGACCATTTTGTATACAATAATGTTCAATCCCAACTGAAAAGGA
TTTTAAAAAaaaatcaAAGAAGTACAGAATATTTGCAGGTCTTTGGT Run BLAST on NCBI protein sequence of TCONS_00035524-protein >TCONS_00035524-protein ID=TCONS_00035524-protein|Name=TCONS_00035524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MQDMHMQHQEEGEVVRKEETANNDDDKVDDDYQDDNDGNNINNNDYNHHN
NYHNQNDDFLLTKEPSWDNLTANIEELHEHEMSKMFDTLNVNVDDCDINE
EDFFTETNSYPYDEPKPLCRGVNMSLENSLLLHMAFSRRHNLTKAALKDL
LSLTSLHLCKPNGFPTTVDQMYNVLGLQESEVTNVYYCSNCNISLDKPSD
KCIHCPSETRPFCIQ Run BLAST on NCBI transcript from alignment at sc0001327:26613..30539+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035524 ID=TCONS_00035524|Name=TCONS_00035524|organism=Clytia hemisphaerica|type=transcript|length=3927bp|location=Sequence derived from alignment at sc0001327:26613..30539+ (Clytia hemisphaerica)
ATATTCTCGAAATGGTAGACAAAGCTGCAAATGGTCAGATGCTGAAGGAA
TTCCGATGCTGAATGATGGAGCTGGATTGTAACCAATTTGACCGTGAAAG
CATCTTCGATAGCTATTTAGAATcgataaattaacctttgtttcAGGATG
TTTTACCTTCTAATGATGTTGATTTTGATATGCAGGATATGCATATGCAG
CACCAGGAGGAGGGGGAAGTTGTTCGAAAAGAAGAAACTGCTAACAATGA
TGATGATAAAGTTGATGATGATTATCAAGATGATAATGATGGCAACAATA
TTAACAATAATGATTATAATCACCACAACAATTATCATAACCAAAATGAC
GATTTTCTTTTGACAAAGGAACCATCTTGGGATAACTTGACTGCAAACAT
AGAAGAACTTCATGAACATGAAATGAGTAAGTGTGTGTACGCATACCAAA
AGCAAATACAATTATCTACAGTATAAGTATAGCAAGCATGCATGCAGTCT
TGCTCTGCTGACAGTCATGCAGGAGGTGCTTGGCACTATATTAAATGTAA
TGTCACATCGTGTTGGCAGTATGTTATAATGTATTGCCACATACATTAGA
TTACCAATAACAACAATTGTTGCACAAACACTTGTAATTTATGGGCgcga
gcaccctgttgctaagaggttggcttgaaatcgaaaatgaaaccactgaa
aatgaaagtaaaattggctcgcactcgaaatcccgtaatcttgatatact
aGTTTCCATTCCACTTGTccgttaatttttttaatcaaactttaatcgtt
cgatgaagTTAGATTAGCTCGATGGTTCGATTGGTTCCACGTtttgatcg
ggtctggtttaGTAGGTCTTTACTGTCTGGACGACCCTGTCGGGGCGCAC
TGGACAGTCTGGTGTTTTTGTCCGGtgccaaaaagtatcctttcttTACA
CCGGGCGGGGTGAGTCCAGTGTCAAATGCCGGGAGCTCTAGGCACCGGAC
ATGCGTCAGAAGAAAATTAATGCGCACCAGACACATCGGACTTCGGACTT
CCATAAGTCCGGTGTTGGGGTTGTCCAGTGGTAAAAAGTATTCTTATCTG
ACACCGGACATCCACTATGTCAGACGTGCTGTCGAGTCCGGTGCGCCGGC
AGGGTCGTCTGTCTGGAAGTGCGAAAAAACAGCACTTTTTGCTCCAGACG
TTTCCAGAGGGCACCTGAGGGTCCTCATAACGATAATGTACCGtgagaaa
gggtaacttgcaacAGTGGAGGCTAAAATGCAAATCAAAGATCTCGTtaa
tggtcattaaaatacaaagttaaaaatcaaaacaaacctgattttaaaaa
tgtataccgtgagaaagggtaacttgcaacACTGGAGGGAAACATGCACA
TACTCCAATTAATTGACCAACTAAatcagtaaaatttcaaaacaaatgtt
ccGCTCACTGCTCTgctctaccattttagaatctcatATTTTGCCGCAca
agtattttttcaataaaatcgcaagtaaaaaaaacagcatggttggataa
taaaaaatcataaattttcagATGGCGGGAGTTCAAATGTTTCTCAATGG
CTGCTGGACATGCAATCTCCAGTTACGAACATTTGGCGCGAGTTCCTGTA
TAATCTAGGTAAAAAACGTTATAAATAagaaaacatagtaagtataagca
gactgtgTATTTAATTGCCTCTAAAACTCTTTGCACTGGTAGaaatttct
caaactttcaacaatgaGGTCTTGATTTAGAAAGGGCTGTGCATTTTAGC
CTCCACTgttgcaagttaccctttctcaCGGTATTAGTCTGtactttgaa
aaatatatttaaatttttcctgtttttcagGCAAAATGTTTGACACGTTG
AATGTTAATGTTGATGATTGTGACATCAATGAAGAGGACTTCTTTACTGA
GACAAATTCATATCCATACGACGAGCCAAAGCCATTGTGCAGAGGAGTAA
ATATGTCACTTGAAAATTCGCTGCTTCTTCACATGGCATTTTCCAGGAGG
CACAATCTTACAAAGGCTGCATTGAAAGATCTGTTATCCTTGACATCATT
GCATTTATGTAAACCAAATGGATTCCCAACAACCGTCGATCAAATGTATA
ATGTACTTGGTTTGCAAGAAAGTGAAGTAACAAATGTATATTACTGCAGT
AATTGTAATATATCGTTGGATAAACCAAGTGACAAATGTATTCATTGTCC
AAGTGAAACAAGACCATTTTGTATACAATAATGTTCAATCCCAACTGAAA
AGGATTTTAAAAAGTAAGGACTTTTGTATTTGTATCAAGATTTATGTACT
GACTTTACATGTATGTAATGGGAAAAACTTTCGTGAATTTGAATAATTGG
AGTATTTATGAATTTTACATTTTGTGAGGATAAATTTTTGATTGTGTAAT
AGAAAAATAAGGTTTCATTAATTATATTTAGAACCAGGTGTAAAGAAATC
GTTGTATaagccaaaaataaaaacacaaccAATTTACAGAGACGTTTATG
ATGGAGAAACATACCAGAATCTCATCAAAGCAGGATATTTTAACAAGAGC
CTGAGTTTAACATGTCAAATGAACACGGATGGTGTTAGTCTTTTCAATAG
CAGTTCTTTCTCTGTTTGGCCAGTATATCTCCGCATCAATGAGCTGCCAC
CTAAAATGAGGTTAGAGTTTTAATAAATCAATTATGATTAAATTGACTTT
TCAAAGATCCTCATTCTTTTAAGGtttgaaaaatatgtatttttttatca
ttgctTTAGCCCAGGTTTAAAGTTCCCCCTAAAATCgttttgtgtaattt
acgatgcccaatccaacgattcacgatgcacgatgcacgatccatgcata
tattatgttaattattcaaattatgcatttacaggttttagtaatcacat
attttaattccttcttttgtattcctggAAAATCAATGTAAAATATGCGT
GTATATATATTTtaacctcaacaatcaaatcaaatcaaaacataaacttt
tttgcccatgctttgaattgaatatcttgtaacctttttatttaaaaaaa
aaaacgtttctccgattaaaccaaccaaatgcattggattgagacagggt
tataaacaaaaatttacaatgttgtggtaaagtagggaagacgtttttta
atgaagagcACGTgtataaactcactttttttgagaaagatcaaatgaat
taacttgatcatcaaacaaagaaaaagatcaaataaataagGGCACCAGT
TGCAATTCAGTTGgtgaaaggcttttataagaacatgccaaaagtaataa
tgtagccaatgattccttatttacattattcactgttcttaaaaaaataa
tgaacatacaaaaatgagtttgtgtCTTActaaatttttcgcgccaaaac
ttttctatgacgttaaggctttttctttcattttaaaaacgagTGAGGCA
TGCGgcgaacattttctttctctcgttatatcaatttttgtttttttcta
cacagaagatataagttattttaatcattctgattatgataaattatttc
cccttcttttttaATNttaattttttttttcgttattgttatatgatgtt
tgtagctagcattatgaaaacttattcgtgcataattagaatgattaaca
taatatatgcatgggtcgtgcatcgcgcatcgtgaatcgttggatcgtgc
atcgtaaattacacaaaccgccCTAAAATTTAGTCGAACCCTTATCGTAT
TTCCTGAATAAGAGCCACTgtttattttaataattttaggGGCGACACTT
ATTTTGAACTTGAGATTTaacatttctatttttcttcagaaaatcaAAGA
AGTACAGAATATTTGCAGGTCTTTGGT Coding sequence (CDS) from alignment at sc0001327:26613..30539+ >TCONS_00035524 ID=TCONS_00035524|Name=TCONS_00035524|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0001327:26613..30539+ (Clytia hemisphaerica)
ATGCAGGATATGCATATGCAGCACCAGGAGGAGGGGGAAGTTGTTCGAAA
AGAAGAAACTGCTAACAATGATGATGATAAAGTTGATGATGATTATCAAG
ATGATAATGATGGCAACAATATTAACAATAATGATTATAATCACCACAAC
AATTATCATAACCAAAATGACGATTTTCTTTTGACAAAGGAACCATCTTG
GGATAACTTGACTGCAAACATAGAAGAACTTCATGAACATGAAATGAGCA
AAATGTTTGACACGTTGAATGTTAATGTTGATGATTGTGACATCAATGAA
GAGGACTTCTTTACTGAGACAAATTCATATCCATACGACGAGCCAAAGCC
ATTGTGCAGAGGAGTAAATATGTCACTTGAAAATTCGCTGCTTCTTCACA
TGGCATTTTCCAGGAGGCACAATCTTACAAAGGCTGCATTGAAAGATCTG
TTATCCTTGACATCATTGCATTTATGTAAACCAAATGGATTCCCAACAAC
CGTCGATCAAATGTATAATGTACTTGGTTTGCAAGAAAGTGAAGTAACAA
ATGTATATTACTGCAGTAATTGTAATATATCGTTGGATAAACCAAGTGAC
AAATGTATTCATTGTCCAAGTGAAACAAGACCATTTTGTATACAATAAAT
GCAGGATATGCATATGCAGCACCAGGAGGAGGGGGAAGTTGTTCGAAAAG
AAGAAACTGCTAACAATGATGATGATAAAGTTGATGATGATTATCAAGAT
GATAATGATGGCAACAATATTAACAATAATGATTATAATCACCACAACAA
TTATCATAACCAAAATGACGATTTTCTTTTGACAAAGGAACCATCTTGGG
ATAACTTGACTGCAAACATAGAAGAACTTCATGAACATGAAATGAGCAAA
ATGTTTGACACGTTGAATGTTAATGTTGATGATTGTGACATCAATGAAGA
GGACTTCTTTACTGAGACAAATTCATATCCATACGACGAGCCAAAGCCAT
TGTGCAGAGGAGTAAATATGTCACTTGAAAATTCGCTGCTTCTTCACATG
GCATTTTCCAGGAGGCACAATCTTACAAAGGCTGCATTGAAAGATCTGTT
ATCCTTGACATCATTGCATTTATGTAAACCAAATGGATTCCCAACAACCG
TCGATCAAATGTATAATGTACTTGGTTTGCAAGAAAGTGAAGTAACAAAT
GTATATTACTGCAGTAATTGTAATATATCGTTGGATAAACCAAGTGACAA
ATGTATTCATTGTCCAAGTGAAACAAGACCATTTTGTATACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035524-exon-sc0001327-1491911889:26613..27038 | TCONS_00035524-exon-sc0001327-1491911889:26613..27038 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1510915933:26613..27038 | TCONS_00035524-exon-sc0001327-1510915933:26613..27038 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1575043694:26613..27038 | TCONS_00035524-exon-sc0001327-1575043694:26613..27038 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1491911889:28493..28925 | TCONS_00035524-exon-sc0001327-1491911889:28493..28925 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1510915933:28493..28925 | TCONS_00035524-exon-sc0001327-1510915933:28493..28925 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1575043694:28493..28925 | TCONS_00035524-exon-sc0001327-1575043694:28493..28925 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1491911889:30502..30539 | TCONS_00035524-exon-sc0001327-1491911889:30502..30539 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1510915933:30502..30539 | TCONS_00035524-exon-sc0001327-1510915933:30502..30539 | Clytia hemisphaerica | exon |
| TCONS_00035524-exon-sc0001327-1575043694:30502..30539 | TCONS_00035524-exon-sc0001327-1575043694:30502..30539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001327 | supercontig | sc0001327:26613..30539 + |
Blast
The following BLAST results are available for this feature:
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