TCONS_00035521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035521
Unique NameTCONS_00035521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035521 ID=TCONS_00035521|Name=TCONS_00035521|organism=Clytia hemisphaerica|type=transcript|length=652bp
CTGTGGTCACTCGTTCTCCATTCTTGGTAGTAGCCATGTTCCTTAGTAAA
TGAGTCCAAGGCTTTTCGATAAAGTCCTGATGTCCAGTGTTTACTGTCTA
TAAACATATCGATATCCTCGTCGTAATGAAGAATGCTCTCCGAGCGGGCG
TAACTCATTACAAAACCACCGATTATAAAATATGACACATTATGATTGTT
TAAATGGGTACTAAGCTTCTCCAACACATCCATCATTTTGCGGCGACAGC
ATGGCGGCATATCGATTCTCATTTTACGTTTGGTGTCGTAAATTGCGCCA
GGATCACAATGTCGCGTGTATTTTGTACAGCCCAAGTTTGTTATTGTTCC
GTCTGTGTGAACGATCCATTTGACTCTCTTTTGGGGAACTTTCTTTTTGT
TGTAAAATAACGTTTCATCTCGAAACAAACTTTCGTAAAGTTTGTTGCAT
TTGTCATCTTCTAAATTTTGGTTGTATTCTTGTAATTCGTATATCGCCCA
ATCAGCCGGTGCAAAATGGAAtgttttacacttttcgaaacgGACTTCTG
AGCTGTTACGTAGTAGGTTATATTGATCGAAACTCAAATCGCTTGTCCTT
TTGTAAAACATTCCTTTTGGGAGAGGCTGCTTGATGTCatcgtttttgtt
tt
Run BLAST on NCBI

protein sequence of TCONS_00035521-protein

>TCONS_00035521-protein ID=TCONS_00035521-protein|Name=TCONS_00035521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
NKNDDIKQPLPKGMFYKRTSDLSFDQYNLLRNSSEVRFEKCKTFHFAPAD
WAIYELQEYNQNLEDDKCNKLYESLFRDETLFYNKKKVPQKRVKWIVHTD
GTITNLGCTKYTRHCDPGAIYDTKRKMRIDMPPCCRRKMMDVLEKLSTHL
NNHNVSYFIIGGFVMSYARSESILHYDEDIDMFIDSKHWTSGLYRKALDS
FTKEHGYYQEWRTSDH
Run BLAST on NCBI

transcript from alignment at sc0001322:53828..54479

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035521 ID=TCONS_00035521|Name=TCONS_00035521|organism=Clytia hemisphaerica|type=transcript|length=652bp|location=Sequence derived from alignment at sc0001322:53828..54479 (Clytia hemisphaerica)
aaaacaaaaacgatGACATCAAGCAGCCTCTCCCAAAAGGAATGTTTTAC
AAAAGGACAAGCGATTTGAGTTTCGATCAATATAACCTACTACGTAACAG
CTCAGAAGTCcgtttcgaaaagtgtaaaacaTTCCATTTTGCACCGGCTG
ATTGGGCGATATACGAATTACAAGAATACAACCAAAATTTAGAAGATGAC
AAATGCAACAAACTTTACGAAAGTTTGTTTCGAGATGAAACGTTATTTTA
CAACAAAAAGAAAGTTCCCCAAAAGAGAGTCAAATGGATCGTTCACACAG
ACGGAACAATAACAAACTTGGGCTGTACAAAATACACGCGACATTGTGAT
CCTGGCGCAATTTACGACACCAAACGTAAAATGAGAATCGATATGCCGCC
ATGCTGTCGCCGCAAAATGATGGATGTGTTGGAGAAGCTTAGTACCCATT
TAAACAATCATAATGTGTCATATTTTATAATCGGTGGTTTTGTAATGAGT
TACGCCCGCTCGGAGAGCATTCTTCATTACGACGAGGATATCGATATGTT
TATAGACAGTAAACACTGGACATCAGGACTTTATCGAAAAGCCTTGGACT
CATTTACTAAGGAACATGGCTACTACCAAGAATGGAGAACGAGTGACCAC
AG

Coding sequence (CDS) from alignment at sc0001322:53828..54479

>TCONS_00035521 ID=TCONS_00035521|Name=TCONS_00035521|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0001322:53828..54479 (Clytia hemisphaerica)
aacaaaaacgatGACATCAAGCAGCCTCTCCCAAAAGGAATGTTTTACAA
AAGGACAAGCGATTTGAGTTTCGATCAATATAACCTACTACGTAACAGCT
CAGAAGTCcgtttcgaaaagtgtaaaacaTTCCATTTTGCACCGGCTGAT
TGGGCGATATACGAATTACAAGAATACAACCAAAATTTAGAAGATGACAA
ATGCAACAAACTTTACGAAAGTTTGTTTCGAGATGAAACGTTATTTTACA
ACAAAAAGAAAGTTCCCCAAAAGAGAGTCAAATGGATCGTTCACACAGAC
GGAACAATAACAAACTTGGGCTGTACAAAATACACGCGACATTGTGATCC
TGGCGCAATTTACGACACCAAACGTAAAATGAGAATCGATATGCCGCCAT
GCTGTCGCCGCAAAATGATGGATGTGTTGGAGAAGCTTAGTACCCATTTA
AACAATCATAATGTGTCATATTTTATAATCGGTGGTTTTGTAATGAGTTA
CGCCCGCTCGGAGAGCATTCTTCATTACGACGAGGATATCGATATGTTTA
TAGACAGTAAACACTGGACATCAGGACTTTATCGAAAAGCCTTGGACTCA
TTTACTAAGGAACATGGCTACTACCAAGAATGGAGAACGAGTGACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020778XLOC_020778Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035521-proteinTCONS_00035521-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035521-exon-sc0001322-1491911889:53828..54479TCONS_00035521-exon-sc0001322-1491911889:53828..54479Clytia hemisphaericaexon
TCONS_00035521-exon-sc0001322-1510915933:53828..54479TCONS_00035521-exon-sc0001322-1510915933:53828..54479Clytia hemisphaericaexon
TCONS_00035521-exon-sc0001322-1575043694:53828..54479TCONS_00035521-exon-sc0001322-1575043694:53828..54479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001322supercontigsc0001322:53828..54479 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.462854	0.101031	0.181353	0.266139	0.206018	0.269117	0.102962	0	0.134973	0.627685	0.162274	0.106673	1.07164	0.87995	0.136425	0.123139	0	0.184862	0.170265	0.0890849	0.232293	0.152397	0.275472	0	0.0859839	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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