TCONS_00035518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035518
Unique NameTCONS_00035518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035518 ID=TCONS_00035518|Name=TCONS_00035518|organism=Clytia hemisphaerica|type=transcript|length=442bp
GGAAATATTTTCCACCAGGAAACGGATGCTATAGTTATCAAAACTGATTG
TACAATGGATCCAATAAATCTGtcTGGTTTTGTTTCATGGAAAACGGATT
TTGGTATTGCGGTGATCACGGAGAGTCTCATTCCCAACAATTCAATTCGT
TCCATTCGTTTGTCATCTGGTAAATGTCcatcaaagtttttgttttgcgT
TGTTGttttattgaaaggaCGGAAAAAGAGGACCATAGACCAAACAGAAG
ATAGTTAAGATTattatgtaaaaaatatttatattatattttagtAAATA
GAAAATTACCTCAGTTGGCCAAACCAATTGCCCATATGATGAtgaccaat
tttcaattttcggaaatgtcaaatttgaagacgttgccgtaaactagttt
tagggaaatgGAGGTATGAGATAAGTTTTTTTTGGATAATGT
Run BLAST on NCBI

transcript from alignment at sc0001322:59108..59916-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035518 ID=TCONS_00035518|Name=TCONS_00035518|organism=Clytia hemisphaerica|type=transcript|length=809bp|location=Sequence derived from alignment at sc0001322:59108..59916- (Clytia hemisphaerica)
GGAAATATTTTCCACCAGGAAACGGATGCTATAGTTATCAAAACTGATTG
TACAATGGATCCAATAAATCTGGTAAGGTTTTCTAATTGCTCTAGAACTT
TCAGGGAATATAAAACTCTTTTTAATGATGTTCAGGGTGCTGAAGACTAT
CCTTCAGGTGTTGAAGGGGTGTTGAAGTAATTGGTCAACAAAGTGCACAA
AGTAAAACAAAAAACACTACAACTGTACTCAATCAAATTTTCAAATGATC
TGAAATCTAAAAATTTATCTTTTTAGTCTGGTTTTGTTTCATGGAAAACG
GATTTTGGTATTGCGGTGATCACGGAGAGTCTCATTCCCAACAATTCAAT
TCGTTCCATTCGTTTGTCATCTGGTAAATGTCCATCAAAGTTTTTGTTTT
GCGTTGTTGGTAAGTAACTTACGTTTTATGGTTTTGGCCAAGGCTATTCC
ATTTACTTTCAACAATAGAAAAATACAGGAAAATACATACCTTAAGGTAT
GGTTCTTTAAAGGGCCTTTTAAGTACATTATGTATACAAAACCCTACATC
CCGTAATATCGTTTTATTTCAGTTTTATTGAAAGGACGGAAAAAGAGGAC
CATAGACCAAACAGAAGATAGTTAAGATTATTATGTAAAAAATATTTATA
TTATATTTTAGTAAATAGAAAATTACCTCAGTTGGCCAAACCAATTGCCC
ATATGATGATGACCAATTTTCAATTTTCGGAAATGTCAAATTTGAAGACG
TTGCCGTAAACTAGTTTTAGGGAAATGGAGGTATGAGATAAGTTTTTTTT
GGATAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020775XLOC_020775Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035518-exon-sc0001322-1575043694:59845..59916TCONS_00035518-exon-sc0001322-1575043694:59845..59916Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1575043694:59508..59640TCONS_00035518-exon-sc0001322-1575043694:59508..59640Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1575043694:59108..59344TCONS_00035518-exon-sc0001322-1575043694:59108..59344Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1510915933:59845..59916TCONS_00035518-exon-sc0001322-1510915933:59845..59916Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1510915933:59508..59640TCONS_00035518-exon-sc0001322-1510915933:59508..59640Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1510915933:59108..59344TCONS_00035518-exon-sc0001322-1510915933:59108..59344Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1491911889:59845..59916TCONS_00035518-exon-sc0001322-1491911889:59845..59916Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1491911889:59508..59640TCONS_00035518-exon-sc0001322-1491911889:59508..59640Clytia hemisphaericaexon
TCONS_00035518-exon-sc0001322-1491911889:59108..59344TCONS_00035518-exon-sc0001322-1491911889:59108..59344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001322supercontigsc0001322:59108..59916 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.152265	0.535792	0.344804	0	0.205338	0	0.195761	0	0.160246	0.476801	0	0.101408	0.158517	0.245805	0.294451	0.863161	0.86491	0.234317	0.809305	0.169376	0.147218	0.259568	0.174584	0.158722	0	0.729511	0.626357	0	0.169002	0.983893
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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