TCONS_00035517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035517
Unique NameTCONS_00035517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035517 ID=TCONS_00035517|Name=TCONS_00035517|organism=Clytia hemisphaerica|type=transcript|length=1535bp
tgcagCGCCCTTAATATTAagctaagggtacctttttttcttttttggac
tttttgggccaaagtcccgctaaggcaGGGTCGGATAAATCAGAAAATTa
gatttcagtcccactaagggtcggagaaataggaaaatttcaacttttta
tccccggaaagatcgaaatttggtcaaaattggtcaaatttgtcccagta
agggtcgtaaaattcacaaaattttcctttgttttctcctttttatttta
gtcccggtaagggtccaatggtcgaaagtcgggcgacacaccccctgtca
gctcgcaaccatagtagAATTAAGTGTCTGTTGAGGCATCATGAGAGAGA
AAACGTACATCAAAACTCAACTCAAATAAATTCAGATCAAGTCTtcaaat
ctaactttcaaatcatattttcaaatcaagTTTCATTTTACTTTCGTGGA
CAGAATTCACACCACATATATTTCTGTCAAGTTGTTTGAACTCTATATCA
TCAGAAATTACGAAGATTTGTGTCCAATCAATTCTGTCCCGAAACATTCA
AACAACAAAGAAATTCACCACGTCATGGAGACAGCAAACCTTCATTAATT
GACGAAATCAGTGCGGATTGCATGATTGATGAGATTGATGATTTCATCGC
AGAGCATCCGATCATCACAAGTACACCTAACGATGTTATCGGGAAAAACA
GAAAGCATGCAAAATATCTTAGATAATTCTACCGAACAAAATTTGGCAGA
GAAACCCACAGATACAAAGCAGTCATGACGTCTATCAGTACGTATCTTCT
CAATGCTCAAACCGTCATGTCCGCACGTCATCAAAACATTCACTGAATCG
ACGAATAATGAGGAACTCGAGGAGATAAAAAATGCATCACGTCAATGTCA
AAAGTCTTTGAGAGTCTTTCAACCTGCACTGTTAATTTCATCTTGTAATG
TCCTCTACtggaaaagttgaaaagaagTGTATGAAGTTACGTTTGAATGT
TTCATCCCTTTTGAGAATTTATCGATTCTGAGATGAAAGGGCGTGACCTC
AATAAAGTCAAGACATTCAACAAATCTCAGTTTTCAATCAAACTTCCTCA
ATTCAGTGGCTACTCTTCATATCTACCATCAACTACTACAAGAAACTGAA
GAGGAAACAAAAATCGAGGACGAAGAATTTATCCATGACAAAATAATTGA
TCGGCggctccatctgaggaatataaagattaccgagacgcagcggatcg
ggaaatttacgaaagaaagagaagataaagcgagataccgaccaattaaa
gtcacatttacgaacgaagaggacaagaacacagtgttgcaagcaatagc
aaaagaaaaaggctttccttaccgagtgacagaggatttgaccaaaaatg
aaagcatcgaaagaatggtgtaaggaagccgaaaaaatgaatgctaaaat
caaggaagacaacacaaaatggaaagtccgtTGTCTCAGTGTACGTTACG
GTGTGTTTTTACCGttactttattggaagaacgCG
Run BLAST on NCBI

transcript from alignment at sc0001322:55754..57420-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035517 ID=TCONS_00035517|Name=TCONS_00035517|organism=Clytia hemisphaerica|type=transcript|length=1667bp|location=Sequence derived from alignment at sc0001322:55754..57420- (Clytia hemisphaerica)
TGCAGCGCCCTTAATATTAAGCTAAGGGTACCTTTTTTTCTTTTTTGGAC
TTTTTGGGCCAAAGTCCCGCTAAGGCAGGGTCGGATAAATCAGAAAATTA
GATTTCAGTCCCACTAAGGGTCGGAGAAATAGGAAAATTTCAACTTTTTA
TCCCCGGAAAGATCGAAATTTGGTCAAAATTGGTCAAATTTGTCCCAGTA
AGGGTCGTAAAATTCACAAAATTTTCCTTTGTTTTCTCCTTTTTATTTTA
GTCCCGGTAAGGGTCCAATGGTCGAAAGTCGGGCGACACACCCCCTGTCA
GCTCGCAACCATAGTAGAATTAAGTGTCTGTTGAGGCATCATGAGAGAGA
AAACGTACATCAAAACTCAACTCAAATAAATTCAGATCAAGTCTTCAAAT
CTAACTTTCAAATCATATTTTCAAATCAAGTTTCATTTTACTTTCGTGGA
CAGAATTCACACCACATATATTTCTGTCAAGTTGGTAAGAATTTTACTTT
AAGTTATCAATTTAGAATTTACGTTATTTTCTCTAAAAGACTTTGTCAAT
ATTTTCATCACTATTCTCACTTTGTCACATAGATTCAATCTTGTCATTTC
TTTTTTATCTATTTAGTTTGAACTCTATATCATCAGAAATTACGAAGATT
TGTGTCCAATCAATTCTGTCCCGAAACATTCAAACAACAAAGAAATTCAC
CACGTCATGGAGACAGCAAACCTTCATTAATTGACGAAATCAGTGCGGAT
TGCATGATTGATGAGATTGATGATTTCATCGCAGAGCATCCGATCATCAC
AAGTACACCTAACGATGTTATCGGGAAAAACAGAAAGCATGCAAAATATC
TTAGATAATTCTACCGAACAAAATTTGGCAGAGAAACCCACAGATACAAA
GCAGTCATGACGTCTATCAGTACGTATCTTCTCAATGCTCAAACCGTCAT
GTCCGCACGTCATCAAAACATTCACTGAATCGACGAATAATGAGGAACTC
GAGGAGATAAAAAATGCATCACGTCAATGTCAAAAGTCTTTGAGAGTCTT
TCAACCTGCACTGTTAATTTCATCTTGTAATGTCCTCTACTGGAAAAGTT
GAAAAGAAGTGTATGAAGTTACGTTTGAATGTTTCATCCCTTTTGAGAAT
TTATCGATTCTGAGATGAAAGGGCGTGACCTCAATAAAGTCAAGACATTC
AACAAATCTCAGTTTTCAATCAAACTTCCTCAATTCAGTGGCTACTCTTC
ATATCTACCATCAACTACTACAAGAAACTGAAGAGGAAACAAAAATCGAG
GACGAAGAATTTATCCATGACAAAATAATTGATCGGCGGCTCCATCTGAG
GAATATAAAGATTACCGAGACGCAGCGGATCGGGAAATTTACGAAAGAAA
GAGAAGATAAAGCGAGATACCGACCAATTAAAGTCACATTTACGAACGAA
GAGGACAAGAACACAGTGTTGCAAGCAATAGCAAAAGAAAAAGGCTTTCC
TTACCGAGTGACAGAGGATTTGACCAAAAATGAAAGCATCGAAAGAATGG
TGTAAGGAAGCCGAAAAAATGAATGCTAAAATCAAGGAAGACAACACAAA
ATGGAAAGTCCGTTGTCTCAGTGTACGTTACGGTGTGTTTTTACCGTTAC
TTTATTGGAAGAACGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020774XLOC_020774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035517-exon-sc0001322-1575043694:56937..57420TCONS_00035517-exon-sc0001322-1575043694:56937..57420Clytia hemisphaericaexon
TCONS_00035517-exon-sc0001322-1575043694:55754..56804TCONS_00035517-exon-sc0001322-1575043694:55754..56804Clytia hemisphaericaexon
TCONS_00035517-exon-sc0001322-1510915933:56937..57420TCONS_00035517-exon-sc0001322-1510915933:56937..57420Clytia hemisphaericaexon
TCONS_00035517-exon-sc0001322-1510915933:55754..56804TCONS_00035517-exon-sc0001322-1510915933:55754..56804Clytia hemisphaericaexon
TCONS_00035517-exon-sc0001322-1491911889:56937..57420TCONS_00035517-exon-sc0001322-1491911889:56937..57420Clytia hemisphaericaexon
TCONS_00035517-exon-sc0001322-1491911889:55754..56804TCONS_00035517-exon-sc0001322-1491911889:55754..56804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001322supercontigsc0001322:55754..57420 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.75531	4.36704	6.69832	6.9011	4.62467	3.50999	4.29335	4.34429	2.09611	3.04401	3.49951	3.7855	3.30059	3.72684	2.44828	3.43932	3.17503	2.7655	3.64909	4.15022	2.71361	3.3685	1.1205	1.93417	4.51399	6.61164	2.61219	2.47618	2.8724	2.12402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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