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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035515 ID=TCONS_00035515|Name=TCONS_00035515|organism=Clytia hemisphaerica|type=transcript|length=2017bp
CTTCTTTGTAGCGATTCAATTTCTCACCATGCTGAACTACTGTACCGCTC
CTACAATCAAAAACCGGATCGAATATTACGAAAACGAAAGAAATACGGCC
TTTTGTTTACCGACACTTCATTGATCTCCTCAACCGAGGTCAGAGATACC
GATGGGAAGCAGTTAGCGTTGATTGGCAGCAACCAGACAACGAATCCTCT
TGTCAAAGTTGCTGTTTGGACAATGACTGTGTCAATGGGAGTTATGACGT
TCCTGGTTTTAAACACCTCCAAATACTGGatgtaaattaaaattatcTTC
GAAGAGAAGGGATTGTGAATGGATTGCTGATTTCATTGCCACTTGCCTTT
TCCTTACTTAATTGGCCATTCAATCAAAATAACACCTTTTTTTTTCTCCG
GTAATTTTGGTGACGGATGTACTGATTTAATGGACATTTTCATATTGCCT
TACCCTTATGAATTGAATTCGAAGATTATATATTTGGTCAATGAATTGTC
CAACGGGGAATGGATTAAGAATTTCTCCGTCCGAATTGGACAGaagatta
tttttgatcaaTGAACTCCCTTCCAAGTTGGACGTCATACTGCACAAACT
TATTTTATCGTTCCTCAGTTGATTTTAGCAACACCTGGTAATGACAGAGT
TtatcttttgtattttttccaCGAGCAATTGGTTTGTTCGAGAACTAGAA
AATTAAGTGACTATTGGAAATTGTTTCTTATCGAGAGCATGATGCAAAGA
GTTGGCTATTGGCTTGACTATTTAGGCTCTGCTCTGCCAAGCCTAATCTT
TTGATCTTGAAGATGCGATCTCCTCCTGGATTGCAATGTATTTCTGTGGA
ATTTCCTttgttctgtttttgtttcGTTAGTTTGGTTTAgatttaataaa
tttttattgcaagggatctttattttttttgaaaaatattgtaaataaaC
ACAGTGAACTTTTTAATTccaacctctattattcgaatctttctataatt
cgaactaaaatattggtcccctggAGAGTCGTATAAATTACTCtccgtaa
ttcgaatctttttataatgtgaagaaaattttcagTCCCTTCAAGATCGA
ATTATAGATAGACAACTTGTAAGTGAATTTACTCGTCTTTGTGACTTCGA
GAGTTTTTAAGCACATCTGTTTGCATGGCAGTGTCCATCATCAGTGAAAT
GAAGAAGCAATGCAAGGTCTTCTCATCTACTCTCTTTGATGTTTCATGTC
ACTGACTTATCGAGATTAGGGTTGAATAAATAGTAGCATGGTGACAGGAT
AGGCAACTGGGTGACCCACCCTAACGCCCGATTCGCGGTGGCGCAAATTG
AAAGACAAGAGGCTTCGAATTTCGCTAAAAATTTGCTAACTTCGGCGCTC
CATTACTTTCCACACCCTGAATTCGGCTAAAGTCATTTTTAATaagtgta
atacagtaataaaGGTGTCATATGataatgaaaaaaacttcattaTCTCC
TCTGTTTTCCTTACCCTACTCTTTCTTCAATTTAGCTTTCCACCATTCTA
GACTACCCAAAATGCTAATTGATTTTAGCCTAACAATGAAAACTTATTCG
AAAAGCTTTCGTTATAGTTTTATACATGTCTTTTCCTTAAAAGAGGCGCG
CAAAATACCAGATTTTGGAACTTTCTTCCCAAGTTTTCCCAGGACTTGGT
CGAATCACCGCGCTAATGCTAATAaaacactttttaaaagaactCTATCT
ATAGTCTGTTTCGAAAGTAAGCGGACACTTTATGTTTTATCCTTAAGGTT
ATtctccttggaaatatctttccaacggcgTATGACTTTCTAACATAGTA
TGAATGGGTGCTgggaaaaggtaaaaaaactaAAGTGTCCACTTACCTTT
AAGACGTACTTTAGTATTTAGATGAATATTTTTGTGTaattacattttca
tttttaattgatcCTGCATTTCAAagtagttttatttaatttcaagaaaa
atattaaaaactaggCA Run BLAST on NCBI protein sequence of TCONS_00035515-protein >TCONS_00035515-protein ID=TCONS_00035515-protein|Name=TCONS_00035515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MIMKKTSLSPLFSLPYSFFNLAFHHSRLPKMLIDFSLTMKTYSKSFRYSF
IHVFSLKEARKIPDFGTFFPSFPRTWSNHRANANKTLFKRTLSIVCFESK
RTLYVLSLRLFSLEISFQRRMTF Run BLAST on NCBI transcript from alignment at sc0001321:67908..69924 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035515 ID=TCONS_00035515|Name=TCONS_00035515|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0001321:67908..69924 (Clytia hemisphaerica)
TGcctagtttttaatatttttcttgaaattaaataaaactactTTGAAAT
GCAGgatcaattaaaaatgaaaatgtaattACACAAAAATATTCATCTAA
ATACTAAAGTACGTCTTAAAGGTAAGTGGACACTTtagtttttttacctt
ttcccAGCACCCATTCATACTATGTTAGAAAGTCATAcgccgttggaaag
atatttccaaggagaATAACCTTAAGGATAAAACATAAAGTGTCCGCTTA
CTTTCGAAACAGACTATAGATAGagttcttttaaaaagtgtttTATTAGC
ATTAGCGCGGTGATTCGACCAAGTCCTGGGAAAACTTGGGAAGAAAGTTC
CAAAATCTGGTATTTTGCGCGCCTCTTTTAAGGAAAAGACATGTATAAAA
CTATAACGAAAGCTTTTCGAATAAGTTTTCATTGTTAGGCTAAAATCAAT
TAGCATTTTGGGTAGTCTAGAATGGTGGAAAGCTAAATTGAAGAAAGAGT
AGGGTAAGGAAAACAGAGGAGAtaatgaagtttttttcattatCATATGA
CACCtttattactgtattacacttATTAAAAATGACTTTAGCCGAATTCA
GGGTGTGGAAAGTAATGGAGCGCCGAAGTTAGCAAATTTTTAGCGAAATT
CGAAGCCTCTTGTCTTTCAATTTGCGCCACCGCGAATCGGGCGTTAGGGT
GGGTCACCCAGTTGCCTATCCTGTCACCATGCTACTATTTATTCAACCCT
AATCTCGATAAGTCAGTGACATGAAACATCAAAGAGAGTAGATGAGAAGA
CCTTGCATTGCTTCTTCATTTCACTGATGATGGACACTGCCATGCAAACA
GATGTGCTTAAAAACTCTCGAAGTCACAAAGACGAGTAAATTCACTTACA
AGTTGTCTATCTATAATTCGATCTTGAAGGGActgaaaattttcttcaca
ttataaaaagattcgaattacggaGAGTAATTTATACGACTCTccagggg
accaatattttagttcgaattatagaaagattcgaataatagaggttggA
ATTAAAAAGTTCACTGTGtttatttacaatatttttcaaaaaaaataaag
atcccttgcaataaaaatttattaaatcTAAACCAAACTAACgaaacaaa
aacagaacaaAGGAAATTCCACAGAAATACATTGCAATCCAGGAGGAGAT
CGCATCTTCAAGATCAAAAGATTAGGCTTGGCAGAGCAGAGCCTAAATAG
TCAAGCCAATAGCCAACTCTTTGCATCATGCTCTCGATAAGAAACAATTT
CCAATAGTCACTTAATTTTCTAGTTCTCGAACAAACCAATTGCTCGtgga
aaaaatacaaaagataAACTCTGTCATTACCAGGTGTTGCTAAAATCAAC
TGAGGAACGATAAAATAAGTTTGTGCAGTATGACGTCCAACTTGGAAGGG
AGTTCAttgatcaaaaataatcttCTGTCCAATTCGGACGGAGAAATTCT
TAATCCATTCCCCGTTGGACAATTCATTGACCAAATATATAATCTTCGAA
TTCAATTCATAAGGGTAAGGCAATATGAAAATGTCCATTAAATCAGTACA
TCCGTCACCAAAATTACCGGAGAAAAAAAAAGGTGTTATTTTGATTGAAT
GGCCAATTAAGTAAGGAAAAGGCAAGTGGCAATGAAATCAGCAATCCATT
CACAATCCCTTCTCTTCGAAgataattttaatttacatCCAGTATTTGGA
GGTGTTTAAAACCAGGAACGTCATAACTCCCATTGACACAGTCATTGTCC
AAACAGCAACTTTGACAAGAGGATTCGTTGTCTGGTTGCTGCCAATCAAC
GCTAACTGCTTCCCATCGGTATCTCTGACCTCGGTTGAGGAGATCAATGA
AGTGTCGGTAAACAAAAGGCCGTATTTCTTTCGTTTTCGTAATATTCGAT
CCGGTTTTTGATTGTAGGAGCGGTACAGTAGTTCAGCATGGTGAGAAATT
GAATCGCTACAAAGAAG Coding sequence (CDS) from alignment at sc0001321:67908..69924 >TCONS_00035515 ID=TCONS_00035515|Name=TCONS_00035515|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0001321:67908..69924 (Clytia hemisphaerica)
TTAGAAAGTCATAcgccgttggaaagatatttccaaggagaATAACCTTA
AGGATAAAACATAAAGTGTCCGCTTACTTTCGAAACAGACTATAGATAGa
gttcttttaaaaagtgtttTATTAGCATTAGCGCGGTGATTCGACCAAGT
CCTGGGAAAACTTGGGAAGAAAGTTCCAAAATCTGGTATTTTGCGCGCCT
CTTTTAAGGAAAAGACATGTATAAAACTATAACGAAAGCTTTTCGAATAA
GTTTTCATTGTTAGGCTAAAATCAATTAGCATTTTGGGTAGTCTAGAATG
GTGGAAAGCTAAATTGAAGAAAGAGTAGGGTAAGGAAAACAGAGGAGAta
atgaagtttttttcattatCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035515-exon-sc0001321-1491911889:67908..69924 | TCONS_00035515-exon-sc0001321-1491911889:67908..69924 | Clytia hemisphaerica | exon |
| TCONS_00035515-exon-sc0001321-1510915933:67908..69924 | TCONS_00035515-exon-sc0001321-1510915933:67908..69924 | Clytia hemisphaerica | exon |
| TCONS_00035515-exon-sc0001321-1575043694:67908..69924 | TCONS_00035515-exon-sc0001321-1575043694:67908..69924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001321 | supercontig | sc0001321:67908..69924 . |
Blast
The following BLAST results are available for this feature:
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