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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035512 ID=TCONS_00035512|Name=TCONS_00035512|organism=Clytia hemisphaerica|type=transcript|length=919bp
NTCCGTTCAGAAGGATTATTGCATCTTTGACATAAAACTGATTCCAAAAA
TGACACTCGAAATGAACTTTCTGCAggaatttcattaaaatgaactTGAT
AGACATGGTTCAAAATAGAATTTACACACTCTTGAGCATCAAATTGTTCT
CGTTGTGCATAATCGTAGCCTGGAAGTTCTATAGACTTTATGAATTCGTA
CGTTTCTATGGGTGATTCAGAGCTTTCTATTGTAGAAAATAAGTCTTTGA
TTGCTAAAATACTGGAGTCATTGGTATCAAGAGTTTTAACAAATTCACGG
AAGGTATCAATAGTGTATAATGATTGAATAACTGAATTGACGAAACAGAC
ATTTTGACCTAGATTTTTCAATCCTAATGGTTTGTTTTCTCTAATGAAAT
TTACAGTATTATTATGTATGTTCTTTGGGGTTCCTCGaaaacacgttttc
ttttttggtCTTCCTCTTGGAGATTTAATTGCATTGTTAATTGGCCCTGG
ATTTAATTCTACATCTCCATCTACAATAAGCCGAGTCATTAGCAAAAAAC
TTGTATAGTAAGCAAGGGGTTCGTTATTTGTATATTTGTATTGCAAGTAT
TACTGCCTTGGCGGTGCCTTCGTTGACTTTGGCTGATATCAGCTCTTTTG
GTGggcatgtttttgttttgttttttttgtttatttatttttttatattt
ttttgttttttatattttcttatattttttattttcgtttttcggttttc
ttttttttatgcctctttttttttcgataagtattttacaaaattttcct
aGTAAAATAAGTTCTTCTTTTACTATTTCTTCGTTCTTCTTAGCTGCTAC
TTCCAATACATCTTTCAACTGAATCTTCAGTGTGTCTGCAACTTGAGTTC
AGCTATCAGGGGTTTTCAA Run BLAST on NCBI protein sequence of TCONS_00035512-protein >TCONS_00035512-protein ID=TCONS_00035512-protein|Name=TCONS_00035512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MTRLIVDGDVELNPGPINNAIKSPRGRPKKKTCFRGTPKNIHNNTVNFIR
ENKPLGLKNLGQNVCFVNSVIQSLYTIDTFREFVKTLDTNDSSILAIKDL
FSTIESSESPIETYEFIKSIELPGYDYAQREQFDAQECVNSILNHVYQVH
FNEIPAESSFRVSFLESVLCQRCNNPSER Run BLAST on NCBI transcript from alignment at sc0001321:25279..26197 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035512 ID=TCONS_00035512|Name=TCONS_00035512|organism=Clytia hemisphaerica|type=transcript|length=919bp|location=Sequence derived from alignment at sc0001321:25279..26197 (Clytia hemisphaerica)
TTGAAAACCCCTGATAGCTGAACTCAAGTTGCAGACACACTGAAGATTCA
GTTGAAAGATGTATTGGAAGTAGCAGCTAAGAAGAACGAAGAAATAGTAA
AAGAAGAACTTATTTTACtaggaaaattttgtaaaatacttatcgaaaaa
aaaagaggcataaaaaaaagaaaaccgaaaaacgaaaataaaaaatataa
gaaaatataaaaaacaaaaaaatataaaaaaataaataaacaaaaaaaac
aaaacaaaaacatgccCACCAAAAGAGCTGATATCAGCCAAAGTCAACGA
AGGCACCGCCAAGGCAGTAATACTTGCAATACAAATATACAAATAACGAA
CCCCTTGCTTACTATACAAGTTTTTTGCTAATGACTCGGCTTATTGTAGA
TGGAGATGTAGAATTAAATCCAGGGCCAATTAACAATGCAATTAAATCTC
CAAGAGGAAGaccaaaaaagaaaacgtgttttCGAGGAACCCCAAAGAAC
ATACATAATAATACTGTAAATTTCATTAGAGAAAACAAACCATTAGGATT
GAAAAATCTAGGTCAAAATGTCTGTTTCGTCAATTCAGTTATTCAATCAT
TATACACTATTGATACCTTCCGTGAATTTGTTAAAACTCTTGATACCAAT
GACTCCAGTATTTTAGCAATCAAAGACTTATTTTCTACAATAGAAAGCTC
TGAATCACCCATAGAAACGTACGAATTCATAAAGTCTATAGAACTTCCAG
GCTACGATTATGCACAACGAGAACAATTTGATGCTCAAGAGTGTGTAAAT
TCTATTTTGAACCATGTCTATCAagttcattttaatgaaattccTGCAGA
AAGTTCATTTCGAGTGTCATTTTTGGAATCAGTTTTATGTCAAAGATGCA
ATAATCCTTCTGAACGGAN Coding sequence (CDS) from alignment at sc0001321:25279..26197 >TCONS_00035512 ID=TCONS_00035512|Name=TCONS_00035512|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0001321:25279..26197 (Clytia hemisphaerica)
ATGACTCGGCTTATTGTAGATGGAGATGTAGAATTAAATCCAGGGCCAAT
TAACAATGCAATTAAATCTCCAAGAGGAAGaccaaaaaagaaaacgtgtt
ttCGAGGAACCCCAAAGAACATACATAATAATACTGTAAATTTCATTAGA
GAAAACAAACCATTAGGATTGAAAAATCTAGGTCAAAATGTCTGTTTCGT
CAATTCAGTTATTCAATCATTATACACTATTGATACCTTCCGTGAATTTG
TTAAAACTCTTGATACCAATGACTCCAGTATTTTAGCAATCAAAGACTTA
TTTTCTACAATAGAAAGCTCTGAATCACCCATAGAAACGTACGAATTCAT
AAAGTCTATAGAACTTCCAGGCTACGATTATGCACAACGAGAACAATTTG
ATGCTCAAGAGTGTGTAAATTCTATTTTGAACCATGTCTATCAagttcat
tttaatgaaattccTGCAGAAAGTTCATTTCGAGTGTCATTTTTGGAATC
AGTTTTATGTCAAAGATGCAATAATCCTTCTGAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035512-exon-sc0001321-1491911889:25279..26197 | TCONS_00035512-exon-sc0001321-1491911889:25279..26197 | Clytia hemisphaerica | exon |
| TCONS_00035512-exon-sc0001321-1510915933:25279..26197 | TCONS_00035512-exon-sc0001321-1510915933:25279..26197 | Clytia hemisphaerica | exon |
| TCONS_00035512-exon-sc0001321-1575043694:25279..26197 | TCONS_00035512-exon-sc0001321-1575043694:25279..26197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001321 | supercontig | sc0001321:25279..26197 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
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