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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035509 ID=TCONS_00035509|Name=TCONS_00035509|organism=Clytia hemisphaerica|type=transcript|length=390bp
GGCATATCAAGTCACTGCTGATCAAATTATCTGAATGAACCATGTCAATG
ACATGTTTTTTGAAAGATCTGACGTTTAAAAGTGAAATGTGCAAATGTTT
ACTGGAAGTCAAAGCAGgtgaaaaagtttcaactttttgcaaagAACTTT
CTCTCCTTAATCGTTCATATTCAATGCCTGCTTCATTGTTAACACGGATA
TGCTTTCTATTGTATTCACCAATCAGAAATAACCCATTTATATTTGTCAC
TCTGGATAAATTTACATACATTTGGCCTTCATTGAAAGCTTTTTGAGCAA
ATAATTCAAAGCTTACTACTGCAGATTGTAGTGTTAATCCTTGGACTTTA
TGACTTGTACAGGCATAAGACAAGACTAGAGGAAATTGTG Run BLAST on NCBI transcript from alignment at sc0001321:50009..51074- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035509 ID=TCONS_00035509|Name=TCONS_00035509|organism=Clytia hemisphaerica|type=transcript|length=1066bp|location=Sequence derived from alignment at sc0001321:50009..51074- (Clytia hemisphaerica)
GGCATATCAAGTCACTGCTGATCAAATTATCTGAATGAACCATGTCAATG
ACATGTTTTTTGAAAGATCTGACATTTAAAAGTGAAATGTGCNCAGATAA
GCAGGCTAAGTAAGCTATATGGTTATGCATGTTTGAATATTTAGGAATTG
TTCAATAGAGTGAAGCAAACTCCATCATGGTCTGAAAAATATATATCTTT
TACAAAGCATTGTACTTCTTTTTTATCTAAGTAAGTCTTTTTCAAATACA
CATGATCAAGAAGACCACCTGCCAAATGAGTAGGTTCATTCACTATCAGT
TTGTATGATGAGAGCACATCAGCAAGGTCTTCATTTGCAGCATCCAAAGC
ATCGATATTGAAATCTCCCAGGATAATCTGTACTTCATCATATAAAAGTG
TTCTCAGTTCTTCAAGAAAAGTATTTCTTGAAAAGTTAGGTGGCTTGTAC
AAGAGTAGAAGTGTAATAGGTTGCTCACTAAATGTCTCTTTTTTAAACAT
TATCTGTGTATAACCAGCTGCTTTTTGGCATTCTAAAATTTCTATTGAAG
AATTTGCACAACATGCAGTGTTTTGAAATCTATTGACTGAATTATTATTG
TAATCAATTTTGAAATTTTGCAAGGATTGATCAATGTCATTTGTTTCACT
TGAAGGTGACAGTTGAGTTTCAGTAAGGCATATGAAGTCACTGCTGATCA
AAGTATCTGAATGAACTATGTCATTGGCATGTTTTTTGAAAGATCTGACG
TTTAAAAGTGAAATGTGCAAATGTTTACTGGAAGTCAAAGCAGGTGAAAA
AGTTTCAACTTTTTGCAAAGAACTTTCTCTCCTTAATCGTTCATATTCAA
TGCCTGCTTCATTGTTAACACGGATATGCTTTCTATTGTATTCACCAATC
AGAAATAACCCATTTATATTTGTCACTCTGGATAAATTTACATACATTTG
GCCTTCATTGAAAGCTTTTTGAGCAAATAATTCAAAGCTTACTACTGCAG
ATTGTAGTGTTAATCCTTGGACTTTATGACTTGTACAGGCATAAGACAAG
ACTAGAGGAAATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035509-exon-sc0001321-1575043694:51002..51074 | TCONS_00035509-exon-sc0001321-1575043694:51002..51074 | Clytia hemisphaerica | exon |
| TCONS_00035509-exon-sc0001321-1575043694:50009..50325 | TCONS_00035509-exon-sc0001321-1575043694:50009..50325 | Clytia hemisphaerica | exon |
| TCONS_00035509-exon-sc0001321-1510915933:51002..51074 | TCONS_00035509-exon-sc0001321-1510915933:51002..51074 | Clytia hemisphaerica | exon |
| TCONS_00035509-exon-sc0001321-1510915933:50009..50325 | TCONS_00035509-exon-sc0001321-1510915933:50009..50325 | Clytia hemisphaerica | exon |
| TCONS_00035509-exon-sc0001321-1491911889:51002..51074 | TCONS_00035509-exon-sc0001321-1491911889:51002..51074 | Clytia hemisphaerica | exon |
| TCONS_00035509-exon-sc0001321-1491911889:50009..50325 | TCONS_00035509-exon-sc0001321-1491911889:50009..50325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001321 | supercontig | sc0001321:50009..51074 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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