TCONS_00035508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035508
Unique NameTCONS_00035508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035508 ID=TCONS_00035508|Name=TCONS_00035508|organism=Clytia hemisphaerica|type=transcript|length=1839bp
atttttttaaattttatacttctgttatttttctgtttattaattttaca
aaatcatttcatttaacaactcaacttttaagatacaaaatatttaaaat
aacatgaacaaaaatattaaaatgctGGACTATTGAATTGATTTATAAGT
ATTGTAATGGAATTCTTCTTTGTCAAAATCGTCAATTATTTGTGGTTAAG
TATTGTTATTGGTGTCATTGTGATAGAATTTACGTTCGTGAAATGATTGT
TAATATGGATTTATTGCTAACCATCTAAAGAAGCAGCCAGTTAATTTGAA
TCATCATTGGTATCATGCATAAGttgaatttgtccaaaaatACTAAATCA
AAGTATTATACAGAaggaaaaaaacacaaaaacaggTTAGTGCATCGCAA
GTCTtttgaacagcaacaaaaataTACTGTATTCTTTCCTCGCTCAATCG
TATCAGGCTTCATgtcgattttttgtcaatattgaCGAGTCTCTTTTACA
GAGCTATTTAGGTGTTATAACCTGTTATAATTGATGAATTTTAAATAGCA
TTTATTCATGATGTGATATCTCATAGTTTAGCACAAATAAAAGtgagtac
acatttttttattagaacaccaaATCTTTCGGCTAGATGGGCCTATTTTC
TTGCAAATTTCCAGCCTAAAATTTGagcttgttcttaatttctttCCAGA
ACACTTAAGgtatgttctaataaaaaaacgtgtaagctaGCCTGTCTATG
TAATTGCATAAAATCATTTTCCTTTACAGGATTACGACCAAATTTCTCCT
CGATCAATACCAAGTCATGAATGTATGTATATATTCACTTATTGCAAAAT
GATTAATCAACTCACCCCTGCAACAAACAACATTGATGGTATTCAATTGA
AAATCAGATCTCGAATCACAGATGGTAGTTCACCGTTATACTGTTGCTTT
TACTGTGGATAAAACATTACCGTCAGTTTGCTCACATTAaaagatttcat
tgaaaatttgattattggaaaggttgctGATGTTaacgttttcaagaaaa
ttctaCTTGATTTAAAGTGATCAAAAATACTACATCGTTAAATTAGCTTG
TCTGTTGTCTGGATTGGTTTGCCCTTAGTTTATTGGAAAATCATGTGTGC
TTTTTCTCTACCAATGTAAAACAACGTAAATAAATCCCTTGGTTTGGTGT
GGTTTGTATTCATTGTTGAAAATCATTGCTTGGTTGAACTTGTACGatta
aaaagactttaatttgtTACCAGCTGAATGATTAAACGAACCCTTTTTAT
ATAGACAAAATAAAATGAACTCTAACTTTTCATGTAAATAAATCTATATT
TTTAAAGagttataaaatgtttttaaaattctcCATTGTTAAATTTAATA
ATATTTCacttgtttcaaaaaaaatgtcaatcaTTCTGTAATATTTATCC
CTTTGATTCCCATGACTCTACTAATTACTCTTTTCTCTCCGATTAGTTGT
GAGTGATATTCAGCACAGCTAGCTCATTTTATCCTTAGATACCAAACCCC
GAAACAGATGGGAAACCACTGGAAACGGGTACAAACGAGTAAGGGAATGA
ATGAAAAACCACTTAATCTTGTCCTCTCAAATTTTAAATATATCATGATT
ATATTCAAAACAGATCAGGGAAAAGTTCATCTTCCTCAAGGTGTTTTAAA
CACTACATTGCGTGCTTtatattttgtgaaaaaattgttGCAATAGAACG
GCTGTGACTCCATAATAAATCATGGAGATTGGTAACGTCCAGCCACACAT
CAGATTCGATCTGACAGCTCACACTGTACCATTCTTAGT
Run BLAST on NCBI

transcript from alignment at sc0001321:52375..54417+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035508 ID=TCONS_00035508|Name=TCONS_00035508|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at sc0001321:52375..54417+ (Clytia hemisphaerica)
atttttttaaattttatacttctgttatttttctgtttattaattttaca aaatcatttcatttaacaactcaacttttaagatacaaaatatttaaaat aacatgaacaaaaatattaaaatgctGGACTATTGAATTGATTTATAAGT ATTGTAATGGAATTCTTCTTTGTCAAAATCGTCAATTATTTGTGGTTAAG TATTGTTATTGGTGTCATTGTGATAGAATTTACGTTCGTGAAATGATTGT TAATATGGATTTATTGCTAACCATCTAAAGAAGCAGCCAGTTAATTTGAA TCATCATTGGTATCATGCATAAGttgaatttgtccaaaaatACTAAATCA AAGTATTATACAGAaggaaaaaaacacaaaaacaggTTAGTGCATCGCAA GTCTtttgaacagcaacaaaaataTACTGTATTCTTTCCTCGCTCAATCG TATCAGGCTTCATgtcgattttttgtcaatattgaCGAGTCTCTTTTACA GAGCTATTTAGGTGTTATAACCTGTTATAATTGATGAATTTTAAATAGCA TTTATTCATGATGTGATATCTCATAGTTTAGCACAAATAAAAGtgagtac acatttttttattagaacaccaaATCTTTCGGCTAGATGGGCCTATTTTC TTGCAAATTTCCAGCCTAAAATTTGagcttgttcttaatttctttCCAGA ACACTTAAGgtatgttctaataaaaaaacgtgtaagctaGCCTGTCTATG TAATTGCATAAAATCATTTTCCTTTACAGGATTACGACCAAATTTCTCCT CGATCAATACCAAGTCATGAATGTATGTATATATTCACTTATTGCAAAAT GATTAATCAACTCACCCCTGCAACAAACAACATTGATGGTATTCAATTGA AAATCAGGTACTTtaattttcagtcattttcaagcttttttgCCCAGTTC ATTTGATAGATATTATAAATATACTTTTTTAGAGCTCTACTGTATACCGT TAACTTTGATTTGTTTCGAAATCGATCTGCATTGGCCTTTGAAATCATTG CCAGCCGTTTCAGCGTGCATCTAGCTCCATAAtgaattctctcttttcta TTATGCATTAGATCTCGAATCACAGATGGTAGTTCACCGTTATACTGTTG CTTTTACTGTGGATAAAACATTACCGTCAGTTTGCTCACATTAaaagatt tcattgaaaatttgattattggaaaggttgctGATGTTaacgttttcaag aaaattctaCTTGATTTAAAGTGATCAAAAATACTACATCGTTAAATTAG CTTGTCTGTTGTCTGGATTGGTTTGCCCTTAGTTTATTGGAAAATCATGT GTGCTTTTTCTCTACCAATGTAAAACAACGTAAATAAATCCCTTGGTTTG GTGTGGTTTGTATTCATTGTTGAAAATCATTGCTTGGTTGAACTTGTACG attaaaaagactttaatttgtTACCAGCTGAATGATTAAACGAACCCTTT TTATATAGACAAAATAAAATGAACTCTAACTTTTCATGTAAATAAATCTA TATTTTTAAAGagttataaaatgtttttaaaattctcCATTGTTAAATTT AATAATATTTCacttgtttcaaaaaaaatgtcaatcaTTCTGTAATATTT ATCCCTTTGATTCCCATGACTCTACTAATTACTCTTTTCTCTCCGATTAG TTGTGAGTGATATTCAGCACAGCTAGCTCATTTTATCCTTAGATACCAAA CCCCGAAACAGATGGGAAACCACTGGAAACGGGTACAAACGAGTAAGGGA ATGAATGAAAAACCACTTAATCTTGTCCTCTCAAATTTTAAATATATCAT GATTATATTCAAAACAGATCAGGGAAAAGTTCATCTTCCTCAAGGTGTTT TAAACACTACATTGCGTGCTTtatattttgtgaaaaaattgttGCAATAG AACGGCTGTGACTCCATAATAAATCATGGAGATTGGTAACGTCCAGCCAC ACATCAGATTCGATCTGACAGCTCACACTGTACCATTCTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020765XLOC_020765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035508-exon-sc0001321-1491911889:52375..53281TCONS_00035508-exon-sc0001321-1491911889:52375..53281Clytia hemisphaericaexon
TCONS_00035508-exon-sc0001321-1510915933:52375..53281TCONS_00035508-exon-sc0001321-1510915933:52375..53281Clytia hemisphaericaexon
TCONS_00035508-exon-sc0001321-1575043694:52375..53281TCONS_00035508-exon-sc0001321-1575043694:52375..53281Clytia hemisphaericaexon
TCONS_00035508-exon-sc0001321-1491911889:53486..54417TCONS_00035508-exon-sc0001321-1491911889:53486..54417Clytia hemisphaericaexon
TCONS_00035508-exon-sc0001321-1510915933:53486..54417TCONS_00035508-exon-sc0001321-1510915933:53486..54417Clytia hemisphaericaexon
TCONS_00035508-exon-sc0001321-1575043694:53486..54417TCONS_00035508-exon-sc0001321-1575043694:53486..54417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001321supercontigsc0001321:52375..54417 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278917 0 0.207387 0.107966 0.188983 0.0702958 0.547291 0.301117 0.262158 0.0832357 0.134283 0.111984 0.341931 0.326953 0.19508 1.81124 0 0.30904 0 0.441165 0.361195 0.47448 0 0.287371 0 0.132198 4.74325 4.96924 0.0969788 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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