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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035507 ID=TCONS_00035507|Name=TCONS_00035507|organism=Clytia hemisphaerica|type=transcript|length=1475bp
CATTTGTAGATAAGATTTAAaattatgtttatttttttaaattttatact
tctgttatttttctgtttattaattttacaaaatcatttcatttaacaac
tcaacttttaagatacaaaatatttaaaataacatgaacaaaaatattaa
aatgctGGACTATTGAATTGATTTATAAGTATTGTAATGGAATTCTTCTT
TGTCAAAATCGTCAATTATTTGTGGTTAAGTATTGTTATTGGTGTCATTG
TGATAGAATTTACGTTCGTGAAATGATTGTTAATATGGATTTATTGCTAA
CCATCTAAAGAAGCAGCCAGTTAATTTGAATCATCATTGGTATCATGCAT
AAGttgaatttgtccaaaaatACTAAATCAAAGTATTATACAGAaggaaa
aaaacacaaaaacagGATTACGACCAAATTTCTCCTCGATCAATACCAAG
TCATGAATGTATGTATATATTCACTTATTGCAAAATGATTAATCAACTCA
CCCCTGCAACAAACAACATTGATGGTATTCAATTGAAAATCAGATCTCGA
ATCACAGATGGTAGTTCACCGTTATACTGTTGCTTTTACTGTGGATAAAA
CATTACCGTCAGTTTGCTCACATTAaaagatttcattgaaaatttgatta
ttggaaaggttgctGATGTTaacgttttcaagaaaattctaCTTGATTTA
AAGTGATCAAAAATACTACATCGTTAAATTAGCTTGTCTGTTGTCTGGAT
TGGTTTGCCCTTAGTTTATTGGAAAATCATGTGTGCTTTTTCTCTACCAA
TGTAAAACAACGTAAATAAATCCCTTGGTTTGGTGTGGTTTGTATTCATT
GTTGAAAATCATTGCTTGGTTGAACTTGTACGattaaaaagactttaatt
tgtTACCAGCTGAATGATTAAACGAACCCTTTTTATATAGACAAAATAAA
ATGAACTCTAACTTTTCATGTAAATAAATCTATATTTTTAAAGagttata
aaatgtttttaaaattctcCATTGTTAAATTTAATAATATTTCacttgtt
tcaaaaaaaatgtcaatcaTTCTGTAATATTTATCCCTTTGATTCCCATG
ACTCTACTAATTACTCTTTTCTCTCCGATTAGTTGTGAGTGATATTCAGC
ACAGCTAGCTCATTTTATCCTTAGATACCAAACCCCGAAACAGATGGGAA
ACCACTGGAAACGGGTACAAACGAGTAAGGGAATGAATGAAAAACCACTT
AATCTTGTCCTCTCAAATTTTAAATATATCATGATTATATTCAAAACAGA
TCAGGGAAAAGTTCATCTTCCTCAAGGTGTTTTAAACACTACATTGCGTG
CTTtatattttgtgaaaaaattgttGCAATAGAACGGCTGTGACTCCATA
ATAAATCATGGAGATTGGTAACGTCCAGCCACACATCAGATTCGATCTGA
CAGCTCACACTGTACCATTCTTAGT Run BLAST on NCBI transcript from alignment at sc0001321:52345..54417+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035507 ID=TCONS_00035507|Name=TCONS_00035507|organism=Clytia hemisphaerica|type=transcript|length=2073bp|location=Sequence derived from alignment at sc0001321:52345..54417+ (Clytia hemisphaerica)
CATTTGTAGATAAGATTTAAaattatgtttatttttttaaattttatact
tctgttatttttctgtttattaattttacaaaatcatttcatttaacaac
tcaacttttaagatacaaaatatttaaaataacatgaacaaaaatattaa
aatgctGGACTATTGAATTGATTTATAAGTATTGTAATGGAATTCTTCTT
TGTCAAAATCGTCAATTATTTGTGGTTAAGTATTGTTATTGGTGTCATTG
TGATAGAATTTACGTTCGTGAAATGATTGTTAATATGGATTTATTGCTAA
CCATCTAAAGAAGCAGCCAGTTAATTTGAATCATCATTGGTATCATGCAT
AAGttgaatttgtccaaaaatACTAAATCAAAGTATTATACAGAaggaaa
aaaacacaaaaacaggTTAGTGCATCGCAAGTCTtttgaacagcaacaaa
aataTACTGTATTCTTTCCTCGCTCAATCGTATCAGGCTTCATgtcgatt
ttttgtcaatattgaCGAGTCTCTTTTACAGAGCTATTTAGGTGTTATAA
CCTGTTATAATTGATGAATTTTAAATAGCATTTATTCATGATGTGATATC
TCATAGTTTAGCACAAATAAAAGtgagtacacatttttttattagaacac
caaATCTTTCGGCTAGATGGGCCTATTTTCTTGCAAATTTCCAGCCTAAA
ATTTGagcttgttcttaatttctttCCAGAACACTTAAGgtatgttctaa
taaaaaaacgtgtaagctaGCCTGTCTATGTAATTGCATAAAATCATTTT
CCTTTACAGGATTACGACCAAATTTCTCCTCGATCAATACCAAGTCATGA
ATGTATGTATATATTCACTTATTGCAAAATGATTAATCAACTCACCCCTG
CAACAAACAACATTGATGGTATTCAATTGAAAATCAGGTACTTtaatttt
cagtcattttcaagcttttttgCCCAGTTCATTTGATAGATATTATAAAT
ATACTTTTTTAGAGCTCTACTGTATACCGTTAACTTTGATTTGTTTCGAA
ATCGATCTGCATTGGCCTTTGAAATCATTGCCAGCCGTTTCAGCGTGCAT
CTAGCTCCATAAtgaattctctcttttctaTTATGCATTAGATCTCGAAT
CACAGATGGTAGTTCACCGTTATACTGTTGCTTTTACTGTGGATAAAACA
TTACCGTCAGTTTGCTCACATTAaaagatttcattgaaaatttgattatt
ggaaaggttgctGATGTTaacgttttcaagaaaattctaCTTGATTTAAA
GTGATCAAAAATACTACATCGTTAAATTAGCTTGTCTGTTGTCTGGATTG
GTTTGCCCTTAGTTTATTGGAAAATCATGTGTGCTTTTTCTCTACCAATG
TAAAACAACGTAAATAAATCCCTTGGTTTGGTGTGGTTTGTATTCATTGT
TGAAAATCATTGCTTGGTTGAACTTGTACGattaaaaagactttaatttg
tTACCAGCTGAATGATTAAACGAACCCTTTTTATATAGACAAAATAAAAT
GAACTCTAACTTTTCATGTAAATAAATCTATATTTTTAAAGagttataaa
atgtttttaaaattctcCATTGTTAAATTTAATAATATTTCacttgtttc
aaaaaaaatgtcaatcaTTCTGTAATATTTATCCCTTTGATTCCCATGAC
TCTACTAATTACTCTTTTCTCTCCGATTAGTTGTGAGTGATATTCAGCAC
AGCTAGCTCATTTTATCCTTAGATACCAAACCCCGAAACAGATGGGAAAC
CACTGGAAACGGGTACAAACGAGTAAGGGAATGAATGAAAAACCACTTAA
TCTTGTCCTCTCAAATTTTAAATATATCATGATTATATTCAAAACAGATC
AGGGAAAAGTTCATCTTCCTCAAGGTGTTTTAAACACTACATTGCGTGCT
TtatattttgtgaaaaaattgttGCAATAGAACGGCTGTGACTCCATAAT
AAATCATGGAGATTGGTAACGTCCAGCCACACATCAGATTCGATCTGACA
GCTCACACTGTACCATTCTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035507-exon-sc0001321-1491911889:52345..52759 | TCONS_00035507-exon-sc0001321-1491911889:52345..52759 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1510915933:52345..52759 | TCONS_00035507-exon-sc0001321-1510915933:52345..52759 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1575043694:52345..52759 | TCONS_00035507-exon-sc0001321-1575043694:52345..52759 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1491911889:53154..53281 | TCONS_00035507-exon-sc0001321-1491911889:53154..53281 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1510915933:53154..53281 | TCONS_00035507-exon-sc0001321-1510915933:53154..53281 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1575043694:53154..53281 | TCONS_00035507-exon-sc0001321-1575043694:53154..53281 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1491911889:53486..54417 | TCONS_00035507-exon-sc0001321-1491911889:53486..54417 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1510915933:53486..54417 | TCONS_00035507-exon-sc0001321-1510915933:53486..54417 | Clytia hemisphaerica | exon |
| TCONS_00035507-exon-sc0001321-1575043694:53486..54417 | TCONS_00035507-exon-sc0001321-1575043694:53486..54417 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001321 | supercontig | sc0001321:52345..54417 + |
Blast
The following BLAST results are available for this feature:
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