TCONS_00035501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035501
Unique NameTCONS_00035501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035501 ID=TCONS_00035501|Name=TCONS_00035501|organism=Clytia hemisphaerica|type=transcript|length=537bp
GTGATTGCTGGCTTCTTGTCATTATTGGAGGCCTAGTTAGAAGAGGATCC
AACATGGTGGCAGGACGACGTAGTGTGACTTGTGCTGGGGTCGCTACAGG
GGGTTGGTGGATGGCAGCAAAACGTGGATGTTGCTGTCGGCTGGACATGG
TTTGTAAAACGAATGGGTGGTGATGCTCGCCACGAGGTGAAGCTAGGGTG
GTGAAAATTCTTGGGTCGTCGAGGGGTGGTCTTACATGGATCTGTTGCAT
CATCGAGAGAGGAACTGCTGATGTGTCTTCTGCCGCCGGTCTTGGAGTTT
GGGTAGGTAAAATTGGATTTGGGGATTCAGTGATGATCGAGCCGCTAGGT
CTTGTCATCATTGGATCGTTGAGTAAGAAACCATCGTACGATTGGTAGCC
ACCTTGGCTAAGGTTACCGAAAGTGTTCAGGTTGATGAGGGGAGAGATTT
CAGGATTATGTTGTGGAATTGGATTGCCATCTGGAGCTAGGGTGAAGGTT
GCTGTTGATGTTTCTGTCTGTTGTTGGGTTGTAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00035501-protein

>TCONS_00035501-protein ID=TCONS_00035501-protein|Name=TCONS_00035501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
PTTQQQTETSTATFTLAPDGNPIPQHNPEISPLINLNTFGNLSQGGYQSY
DGFLLNDPMMTRPSGSIITESPNPILPTQTPRPAAEDTSAVPLSMMQQIH
VRPPLDDPRIFTTLASPRGEHHHPFVLQTMSSRQQHPRFAAIHQPPVATP
AQVTLRRPATMLDPLLTRPPIMTRSQQS
Run BLAST on NCBI

transcript from alignment at sc0001320:39046..39582

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035501 ID=TCONS_00035501|Name=TCONS_00035501|organism=Clytia hemisphaerica|type=transcript|length=537bp|location=Sequence derived from alignment at sc0001320:39046..39582 (Clytia hemisphaerica)
CTCCTACAACCCAACAACAGACAGAAACATCAACAGCAACCTTCACCCTA
GCTCCAGATGGCAATCCAATTCCACAACATAATCCTGAAATCTCTCCCCT
CATCAACCTGAACACTTTCGGTAACCTTAGCCAAGGTGGCTACCAATCGT
ACGATGGTTTCTTACTCAACGATCCAATGATGACAAGACCTAGCGGCTCG
ATCATCACTGAATCCCCAAATCCAATTTTACCTACCCAAACTCCAAGACC
GGCGGCAGAAGACACATCAGCAGTTCCTCTCTCGATGATGCAACAGATCC
ATGTAAGACCACCCCTCGACGACCCAAGAATTTTCACCACCCTAGCTTCA
CCTCGTGGCGAGCATCACCACCCATTCGTTTTACAAACCATGTCCAGCCG
ACAGCAACATCCACGTTTTGCTGCCATCCACCAACCCCCTGTAGCGACCC
CAGCACAAGTCACACTACGTCGTCCTGCCACCATGTTGGATCCTCTTCTA
ACTAGGCCTCCAATAATGACAAGAAGCCAGCAATCAC

Coding sequence (CDS) from alignment at sc0001320:39046..39582

>TCONS_00035501 ID=TCONS_00035501|Name=TCONS_00035501|organism=Clytia hemisphaerica|type=CDS|length=534bp|location=Sequence derived from alignment at sc0001320:39046..39582 (Clytia hemisphaerica)
CCTACAACCCAACAACAGACAGAAACATCAACAGCAACCTTCACCCTAGC
TCCAGATGGCAATCCAATTCCACAACATAATCCTGAAATCTCTCCCCTCA
TCAACCTGAACACTTTCGGTAACCTTAGCCAAGGTGGCTACCAATCGTAC
GATGGTTTCTTACTCAACGATCCAATGATGACAAGACCTAGCGGCTCGAT
CATCACTGAATCCCCAAATCCAATTTTACCTACCCAAACTCCAAGACCGG
CGGCAGAAGACACATCAGCAGTTCCTCTCTCGATGATGCAACAGATCCAT
GTAAGACCACCCCTCGACGACCCAAGAATTTTCACCACCCTAGCTTCACC
TCGTGGCGAGCATCACCACCCATTCGTTTTACAAACCATGTCCAGCCGAC
AGCAACATCCACGTTTTGCTGCCATCCACCAACCCCCTGTAGCGACCCCA
GCACAAGTCACACTACGTCGTCCTGCCACCATGTTGGATCCTCTTCTAAC
TAGGCCTCCAATAATGACAAGAAGCCAGCAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020760XLOC_020760Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035501-proteinTCONS_00035501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035501-exon-sc0001320-1491911889:39046..39582TCONS_00035501-exon-sc0001320-1491911889:39046..39582Clytia hemisphaericaexon
TCONS_00035501-exon-sc0001320-1510915933:39046..39582TCONS_00035501-exon-sc0001320-1510915933:39046..39582Clytia hemisphaericaexon
TCONS_00035501-exon-sc0001320-1575043694:39046..39582TCONS_00035501-exon-sc0001320-1575043694:39046..39582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001320supercontigsc0001320:39046..39582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.78573	3.69169	1.59209	0.479266	4.81355	4.72584	4.17185	5.72827	2.55213	4.40314	5.15047	3.45775	4.17231	6.27536	2.82527	4.35019	3.08553	2.74644	4.7142	4.81276	2.61447	0.765149	0.992148	2.25502	5.57428	4.97491	2.52134	1.74113	3.00134	3.42483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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