TCONS_00035498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035498
Unique NameTCONS_00035498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035498 ID=TCONS_00035498|Name=TCONS_00035498|organism=Clytia hemisphaerica|type=transcript|length=788bp
CTGCCCTGTGTCTGGAGACTTAAAAAGtagtcggatttggctgaaatttg
gtacagttgttccttgagtgaatacctattggtgtttttttcatttttga
gggGTAAGTTGTAgcgccaaaacgaggcttaaATGTGACTCGGGGACTCG
TTTTTGAGGTTAGAATGAGGTTAAAAAGTCGCTTAGATTTCTATAACCAT
TGCATTTTATTGGTTATATACACAATTTTCTCCAATTGTAATTGTCGACT
TATATATCTAAAAATTTCCcccttgttttttcttttgcagaTGGCTACTA
ACAATGACAGAAAACTTTGGGAAGAACGtgcacaaaaactgaaaaggaAG
AGAATGGGTCAGGACACAGTGAAGGGTGATAAAGCTGGTGCTGTTGGTTC
TCATATTTTAGCCGAGAGAGAAATGACTGTTCAACGTCTTTCTAGTGTTG
CTACTGGGAAAGCAAtgaaattcaataaaatggggCCTCAGGAATTCGTG
GCCTATCCATTTGATGAATTGACAATCGAAAATTTGATTCAAGCGTGCAG
TGCACATTTTCGAGATGAATTGCTTGACAATCAAAGGTGTGATATTTTGC
AATCACAAGATGGTCCTTCTTGTTCTAAACTTTCACACATTAAAAGTTAT
AAGGTGATTTATGTTCGTTTAATTACAAATGTGAATCAAGCATCCATTTC
CATAAGAAAGTATTTCGATAAGATGAAGATGCCACCTCGCAGCCCTTTAT
CCTCAATAAACGTTTTAAACTCTTTTGCAGTATCAACA
Run BLAST on NCBI

protein sequence of TCONS_00035498-protein

>TCONS_00035498-protein ID=TCONS_00035498-protein|Name=TCONS_00035498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MRLKSRLDFYNHCILLVIYTIFSNCNCRLIYLKISPLFFLLQMATNNDRK
LWEERAQKLKRKRMGQDTVKGDKAGAVGSHILAEREMTVQRLSSVATGKA
MKFNKMGPQEFVAYPFDELTIENLIQACSAHFRDELLDNQRCDILQSQDG
PSCSKLSHIKSYKVIYVRLITNVNQASISIRKYFDKMKMPPRSPLSSINV
LNSFAVST
Run BLAST on NCBI

transcript from alignment at sc0001318:50661..51448

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035498 ID=TCONS_00035498|Name=TCONS_00035498|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0001318:50661..51448 (Clytia hemisphaerica)
TGTTGATACTGCAAAAGAGTTTAAAACGTTTATTGAGGATAAAGGGCTGC
GAGGTGGCATCTTCATCTTATCGAAATACTTTCTTATGGAAATGGATGCT
TGATTCACATTTGTAATTAAACGAACATAAATCACCTTATAACTTTTAAT
GTGTGAAAGTTTAGAACAAGAAGGACCATCTTGTGATTGCAAAATATCAC
ACCTTTGATTGTCAAGCAATTCATCTCGAAAATGTGCACTGCACGCTTGA
ATCAAATTTTCGATTGTCAATTCATCAAATGGATAGGCCACGAATTCCTG
AGGccccattttattgaatttcaTTGCTTTCCCAGTAGCAACACTAGAAA
GACGTTGAACAGTCATTTCTCTCTCGGCTAAAATATGAGAACCAACAGCA
CCAGCTTTATCACCCTTCACTGTGTCCTGACCCATTCTCTtccttttcag
tttttgtgcaCGTTCTTCCCAAAGTTTTCTGTCATTGTTAGTAGCCAtct
gcaaaagaaaaaacaagggGGAAATTTTTAGATATATAAGTCGACAATTA
CAATTGGAGAAAATTGTGTATATAACCAATAAAATGCAATGGTTATAGAA
ATCTAAGCGACTTTTTAACCTCATTCTAACCTCAAAAACGAGTCCCCGAG
TCACATttaagcctcgttttggcgcTACAACTTACccctcaaaaatgaaa
aaaacaccaataggtattcactcaaggaacaactgtaccaaatttcagcc
aaatccgactaCTTTTTAAGTCTCCAGACACAGGGCAG

Coding sequence (CDS) from alignment at sc0001318:50661..51448

>TCONS_00035498 ID=TCONS_00035498|Name=TCONS_00035498|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0001318:50661..51448 (Clytia hemisphaerica)
TGTTGATACTGCAAAAGAGTTTAAAACGTTTATTGAGGATAAAGGGCTGC
GAGGTGGCATCTTCATCTTATCGAAATACTTTCTTATGGAAATGGATGCT
TGATTCACATTTGTAATTAAACGAACATAAATCACCTTATAACTTTTAAT
GTGTGAAAGTTTAGAACAAGAAGGACCATCTTGTGATTGCAAAATATCAC
ACCTTTGATTGTCAAGCAATTCATCTCGAAAATGTGCACTGCACGCTTGA
ATCAAATTTTCGATTGTCAATTCATCAAATGGATAGGCCACGAATTCCTG
AGGccccattttattgaatttcaTTGCTTTCCCAGTAGCAACACTAGAAA
GACGTTGAACAGTCATTTCTCTCTCGGCTAAAATATGAGAACCAACAGCA
CCAGCTTTATCACCCTTCACTGTGTCCTGACCCATTCTCTtccttttcag
tttttgtgcaCGTTCTTCCCAAAGTTTTCTGTCATTGTTAGTAGCCAtct
gcaaaagaaaaaacaagggGGAAATTTTTAGATATATAAGTCGACAATTA
CAATTGGAGAAAATTGTGTATATAACCAATAAAATGCAATGGTTATAGAA
ATCTAAGCGACTTTTTAACCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020757XLOC_020757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035498-exon-sc0001318-1491911889:50661..51448TCONS_00035498-exon-sc0001318-1491911889:50661..51448Clytia hemisphaericaexon
TCONS_00035498-exon-sc0001318-1510915933:50661..51448TCONS_00035498-exon-sc0001318-1510915933:50661..51448Clytia hemisphaericaexon
TCONS_00035498-exon-sc0001318-1575043694:50661..51448TCONS_00035498-exon-sc0001318-1575043694:50661..51448Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035498-proteinTCONS_00035498-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001318supercontigsc0001318:50661..51448 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.099391	0.314908	0.140429	0	1.30764	1.70914	0.478007	0	0.200481	0.305633	0.436095	0.209638	0.141705	0	0.151243	0.135447	0.348511	0.160086	0.114945	0.365847	0.472717	0.97506	0.292256	0.67191	0.565327	0.45493	0.228234	0	0.643228	0.263927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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