TCONS_00035496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035496
Unique NameTCONS_00035496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035496 ID=TCONS_00035496|Name=TCONS_00035496|organism=Clytia hemisphaerica|type=transcript|length=2374bp
CAATTCAGAACATTCGCTGCCCGTGTACAAGGTAAGGCAGAAACATGCGA
ATTTAAGACATCTTTCAAAGCTCCATGTAATAACTGTGATAATGAGATTA
ACGGTGAGACATACTACACTGATGAACGTATAAGAGACGTGTTGTTGAAT
GGCATTGCTGACATAGACATTCGTAGAGAAGCATTAAGTTCTGAGAACAT
CCATGAAAGACCGGTCAATGAGATCATCGCTTTTGTTGAGGCACGTGAAA
TTGCTCGAAACGCTAGTCCTTCTGTCGGGATATCTAGTGTATCAGGATAC
CGCCGTTCTCGTGATAAGCCCAGCCAACAACGATCGTTATCTCCATCTGC
AGCCGACAAGGTAAAAACTGCACCATGTCCAGATTGTGGATCTATATTCC
ATCTTTTCACCCAAAAAACCAGAGGTTGGAACAAGAAGCCACATGAGAGG
TGTGCCAACTGCTGGAAACGCTGCCGCAATGAGAAAAGGCCGGATCAGGC
AGGGAACAATACCATCTCTGCCGCTCAAGATTCAAGCCCGTTCGGTCAAA
TATGTGCCATGTCGCCCAAACCAGTTGATCCACTTCTACCCTCGAGTATC
AACATTCCACAGAAGAACATATCCAGTCAACCCAAACATGTCACCTTGAA
CCACCACATTTTCTCCAAAGGGGAATGGCGCAGAGCTCGTTTGAGGAATC
ACCCCAGTACTCAACTCACCATCTCCAACGACGCACGTCCATCATTTGCA
GCTAGCGTTCAGGCTTTAGCTGATTCAGGTGCCCAGTCTGACCTTTGGTC
GCTTGATGAATACTTGAGTGCAGGGTTCTCGATTGATGAACTACGTCCGG
TGAGATTGGGATTGAACGCTGCAAACAAATCTCCTATACACATTAATGGT
GCGTTTTTCGGTTCGACTTCCGGTAAAACACAGAGTGGGACTATACTCTC
AACAAAATCAATGATTCATGTCAGTCGGGATGTTCATGGTTTCTACCTTT
CATATGATACGATGTTGAACCTAGATATGTTACCAAAATCATTTCCTACC
CCAGGGTGTGCCCGTATTACCACATCCGAGGAGGTAGATGGACTTCTTCA
AAGTATGAACAGTCACACTATTCCTGAAGCTAAGTCATGTGATTGTCCTA
AACGTCAACCTGTTCCTACGAGACCGATGGAACTCCCATTTGAGTGCACC
CATGAGAACAATGGTAAAATGAAAGAATAGCTGCTCAAGCATTTCGAGAA
CTCCACTTTCAACACTTGCCCACACACGCCTTTACCAGTCATGGAAGGAC
CACCTTTGGAGATCCATCTGAAGGACGATGCCAAACCATTTGCCCACACC
AAACCAGCCAAGGTACCCCTTCACTGGCAACAACAGGTGTACGAGGACCT
GATGCGCGATGTGGAGCTTGGTGTTATTGAACGCGTGCCTGAGAATGAGG
AAGTCACTTGGTGCCACAGGATGGTCGTCACCAGGAAACACGATGGCTCG
CCAAGACGTACAGTTGATGCTTCTAGGATGAACAAACATTGTCGTCGTGA
CGCATATGCAACTGAATCACCGCGTTCCATGTTGTTCGTCGTGTACCGGC
TGAAACATGGAAGTCTGTCGTCGACGCATGGAATGGGTACCATAGCATTC
CTCTACGAGACTCTGATAAACATTTAACAACATTTATAACACCTTTCGGG
CACTTCCGATACGGGAGAGCATTGCAAGGTTTCAAAGGCTCCGGAGACGG
ATATAACAGGAGACTCGATTCCACGTTATCAACGTTTGAGCGAAAGGAAC
GAGTCGTTGATGACATGCTCCACCATGACACCGAACTCGAACAGCATTGG
TGGAGAACGATAGATTTATTGATCAAACTTGGGTCGTCAGGAACCTCTGT
TAAACCCCAAAAAATTCCAATTCGCTCAGAAACAAGTTGAATTTGCTGGG
TTTCTTATCTCTGAGAACACAATCGAACCACTTCCTAAATACTTGGATGC
GATCAGAGACTTCCCAAAACCACAATCGACAACAGATATCAGGAGTTGGT
TCGGACCAATTAACCAAGTCGCCAACTACGCTCAACTTCGTGATCACCTC
GAGATATTTCGTCCCTACCTTTCTCCAAGACATCCGTTCCAATGGAATGA
CGAGCTTAACAGAGCGTTTGAAGAATCAAAGTCTGCCATCGTTGACGCTA
TTCGGAAGGGTGTAGAgatttttgatctagaaaaacCGACATGTCTCCGT
CCAGATTGGTCATGCAAGGGTATTGGTTATTTCCTCCTCCAACAACATTG
CGAGTGCACAACATCATCACCAGATTGCTGCCCGGGAGGCTGGAGAATCA
CTTTGACTGGATCACGTTTCCTTC
Run BLAST on NCBI

protein sequence of TCONS_00035496-protein

>TCONS_00035496-protein ID=TCONS_00035496-protein|Name=TCONS_00035496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
QFRTFAARVQGKAETCEFKTSFKAPCNNCDNEINGETYYTDERIRDVLLN
GIADIDIRREALSSENIHERPVNEIIAFVEAREIARNASPSVGISSVSGY
RRSRDKPSQQRSLSPSAADKVKTAPCPDCGSIFHLFTQKTRGWNKKPHER
CANCWKRCRNEKRPDQAGNNTISAAQDSSPFGQICAMSPKPVDPLLPSSI
NIPQKNISSQPKHVTLNHHIFSKGEWRRARLRNHPSTQLTISNDARPSFA
ASVQALADSGAQSDLWSLDEYLSAGFSIDELRPVRLGLNAANKSPIHING
AFFGSTSGKTQSGTILSTKSMIHVSRDVHGFYLSYDTMLNLDMLPKSFPT
PGCARITTSEEVDGLLQSMNSHTIPEAKSCDCPKRQPVPTRPMELPFECT
HENNGKMKE
Run BLAST on NCBI

transcript from alignment at sc0001318:39758..42131

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035496 ID=TCONS_00035496|Name=TCONS_00035496|organism=Clytia hemisphaerica|type=transcript|length=2374bp|location=Sequence derived from alignment at sc0001318:39758..42131 (Clytia hemisphaerica)
GAAGGAAACGTGATCCAGTCAAAGTGATTCTCCAGCCTCCCGGGCAGCAA
TCTGGTGATGATGTTGTGCACTCGCAATGTTGTTGGAGGAGGAAATAACC
AATACCCTTGCATGACCAATCTGGACGGAGACATGTCGgtttttctagat
caaaaatcTCTACACCCTTCCGAATAGCGTCAACGATGGCAGACTTTGAT
TCTTCAAACGCTCTGTTAAGCTCGTCATTCCATTGGAACGGATGTCTTGG
AGAAAGGTAGGGACGAAATATCTCGAGGTGATCACGAAGTTGAGCGTAGT
TGGCGACTTGGTTAATTGGTCCGAACCAACTCCTGATATCTGTTGTCGAT
TGTGGTTTTGGGAAGTCTCTGATCGCATCCAAGTATTTAGGAAGTGGTTC
GATTGTGTTCTCAGAGATAAGAAACCCAGCAAATTCAACTTGTTTCTGAG
CGAATTGGAATTTTTTGGGGTTTAACAGAGGTTCCTGACGACCCAAGTTT
GATCAATAAATCTATCGTTCTCCACCAATGCTGTTCGAGTTCGGTGTCAT
GGTGGAGCATGTCATCAACGACTCGTTCCTTTCGCTCAAACGTTGATAAC
GTGGAATCGAGTCTCCTGTTATATCCGTCTCCGGAGCCTTTGAAACCTTG
CAATGCTCTCCCGTATCGGAAGTGCCCGAAAGGTGTTATAAATGTTGTTA
AATGTTTATCAGAGTCTCGTAGAGGAATGCTATGGTACCCATTCCATGCG
TCGACGACAGACTTCCATGTTTCAGCCGGTACACGACGAACAACATGGAA
CGCGGTGATTCAGTTGCATATGCGTCACGACGACAATGTTTGTTCATCCT
AGAAGCATCAACTGTACGTCTTGGCGAGCCATCGTGTTTCCTGGTGACGA
CCATCCTGTGGCACCAAGTGACTTCCTCATTCTCAGGCACGCGTTCAATA
ACACCAAGCTCCACATCGCGCATCAGGTCCTCGTACACCTGTTGTTGCCA
GTGAAGGGGTACCTTGGCTGGTTTGGTGTGGGCAAATGGTTTGGCATCGT
CCTTCAGATGGATCTCCAAAGGTGGTCCTTCCATGACTGGTAAAGGCGTG
TGTGGGCAAGTGTTGAAAGTGGAGTTCTCGAAATGCTTGAGCAGCTATTC
TTTCATTTTACCATTGTTCTCATGGGTGCACTCAAATGGGAGTTCCATCG
GTCTCGTAGGAACAGGTTGACGTTTAGGACAATCACATGACTTAGCTTCA
GGAATAGTGTGACTGTTCATACTTTGAAGAAGTCCATCTACCTCCTCGGA
TGTGGTAATACGGGCACACCCTGGGGTAGGAAATGATTTTGGTAACATAT
CTAGGTTCAACATCGTATCATATGAAAGGTAGAAACCATGAACATCCCGA
CTGACATGAATCATTGATTTTGTTGAGAGTATAGTCCCACTCTGTGTTTT
ACCGGAAGTCGAACCGAAAAACGCACCATTAATGTGTATAGGAGATTTGT
TTGCAGCGTTCAATCCCAATCTCACCGGACGTAGTTCATCAATCGAGAAC
CCTGCACTCAAGTATTCATCAAGCGACCAAAGGTCAGACTGGGCACCTGA
ATCAGCTAAAGCCTGAACGCTAGCTGCAAATGATGGACGTGCGTCGTTGG
AGATGGTGAGTTGAGTACTGGGGTGATTCCTCAAACGAGCTCTGCGCCAT
TCCCCTTTGGAGAAAATGTGGTGGTTCAAGGTGACATGTTTGGGTTGACT
GGATATGTTCTTCTGTGGAATGTTGATACTCGAGGGTAGAAGTGGATCAA
CTGGTTTGGGCGACATGGCACATATTTGACCGAACGGGCTTGAATCTTGA
GCGGCAGAGATGGTATTGTTCCCTGCCTGATCCGGCCTTTTCTCATTGCG
GCAGCGTTTCCAGCAGTTGGCACACCTCTCATGTGGCTTCTTGTTCCAAC
CTCTGGTTTTTTGGGTGAAAAGATGGAATATAGATCCACAATCTGGACAT
GGTGCAGTTTTTACCTTGTCGGCTGCAGATGGAGATAACGATCGTTGTTG
GCTGGGCTTATCACGAGAACGGCGGTATCCTGATACACTAGATATCCCGA
CAGAAGGACTAGCGTTTCGAGCAATTTCACGTGCCTCAACAAAAGCGATG
ATCTCATTGACCGGTCTTTCATGGATGTTCTCAGAACTTAATGCTTCTCT
ACGAATGTCTATGTCAGCAATGCCATTCAACAACACGTCTCTTATACGTT
CATCAGTGTAGTATGTCTCACCGTTAATCTCATTATCACAGTTATTACAT
GGAGCTTTGAAAGATGTCTTAAATTCGCATGTTTCTGCCTTACCTTGTAC
ACGGGCAGCGAATGTTCTGAATTG

Coding sequence (CDS) from alignment at sc0001318:39758..42131

>TCONS_00035496 ID=TCONS_00035496|Name=TCONS_00035496|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0001318:39758..42131 (Clytia hemisphaerica)
CTATTCTTTCATTTTACCATTGTTCTCATGGGTGCACTCAAATGGGAGTT
CCATCGGTCTCGTAGGAACAGGTTGACGTTTAGGACAATCACATGACTTA
GCTTCAGGAATAGTGTGACTGTTCATACTTTGAAGAAGTCCATCTACCTC
CTCGGATGTGGTAATACGGGCACACCCTGGGGTAGGAAATGATTTTGGTA
ACATATCTAGGTTCAACATCGTATCATATGAAAGGTAGAAACCATGAACA
TCCCGACTGACATGAATCATTGATTTTGTTGAGAGTATAGTCCCACTCTG
TGTTTTACCGGAAGTCGAACCGAAAAACGCACCATTAATGTGTATAGGAG
ATTTGTTTGCAGCGTTCAATCCCAATCTCACCGGACGTAGTTCATCAATC
GAGAACCCTGCACTCAAGTATTCATCAAGCGACCAAAGGTCAGACTGGGC
ACCTGAATCAGCTAAAGCCTGAACGCTAGCTGCAAATGATGGACGTGCGT
CGTTGGAGATGGTGAGTTGAGTACTGGGGTGATTCCTCAAACGAGCTCTG
CGCCATTCCCCTTTGGAGAAAATGTGGTGGTTCAAGGTGACATGTTTGGG
TTGACTGGATATGTTCTTCTGTGGAATGTTGATACTCGAGGGTAGAAGTG
GATCAACTGGTTTGGGCGACATGGCACATATTTGACCGAACGGGCTTGAA
TCTTGAGCGGCAGAGATGGTATTGTTCCCTGCCTGATCCGGCCTTTTCTC
ATTGCGGCAGCGTTTCCAGCAGTTGGCACACCTCTCATGTGGCTTCTTGT
TCCAACCTCTGGTTTTTTGGGTGAAAAGATGGAATATAGATCCACAATCT
GGACATGGTGCAGTTTTTACCTTGTCGGCTGCAGATGGAGATAACGATCG
TTGTTGGCTGGGCTTATCACGAGAACGGCGGTATCCTGATACACTAGATA
TCCCGACAGAAGGACTAGCGTTTCGAGCAATTTCACGTGCCTCAACAAAA
GCGATGATCTCATTGACCGGTCTTTCATGGATGTTCTCAGAACTTAATGC
TTCTCTACGAATGTCTATGTCAGCAATGCCATTCAACAACACGTCTCTTA
TACGTTCATCAGTGTAGTATGTCTCACCGTTAATCTCATTATCACAGTTA
TTACATGGAGCTTTGAAAGATGTCTTAAATTCGCATGTTTCTGCCTTACC
TTGTACACGGGCAGCGAATGTTCTGAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020755XLOC_020755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035496-exon-sc0001318-1491911889:39758..42131TCONS_00035496-exon-sc0001318-1491911889:39758..42131Clytia hemisphaericaexon
TCONS_00035496-exon-sc0001318-1510915933:39758..42131TCONS_00035496-exon-sc0001318-1510915933:39758..42131Clytia hemisphaericaexon
TCONS_00035496-exon-sc0001318-1575043694:39758..42131TCONS_00035496-exon-sc0001318-1575043694:39758..42131Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035496-proteinTCONS_00035496-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001318supercontigsc0001318:39758..42131 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0159799	0	0	0	0.0174627	0.063204	0.177513	0.179517	0.290779	0.282237	0.174618	0.0871876	0.0565907	0.0372202	0.109843	0.0861113	0.113479	0.383233	1.13016	0.095063	0.0927368	0.0375779	0.0170819	0.0175939	0.0314043	0	0	0	0.0185309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top