TCONS_00035490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035490
Unique NameTCONS_00035490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035490 ID=TCONS_00035490|Name=TCONS_00035490|organism=Clytia hemisphaerica|type=transcript|length=292bp
TAGGAAAATTAAAGTGTTGTAAACTTTTATTGGAACATCATGCAGATGTT
AGTATCAAGATGCATCAAGGATGGACGGTGACTCATTGTGCGGTGGAAAA
CGGTCATTTGGAGATCTTGCGGTTATTATATGATCATTTTGCACCGATGT
TTGACAGAGATGACTTCAATGCTACACCAAAAGATATAGCAAGAGTTTAT
GGACATAAAGACTGCTACCAATTTCTAGATGATGTTGAGAATGGACGTAC
AAAACGAAGAAGCATCGAAGAAAAGATAGAAGAAAAATCTCT
Run BLAST on NCBI

transcript from alignment at sc0001318:49650..50410-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035490 ID=TCONS_00035490|Name=TCONS_00035490|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0001318:49650..50410- (Clytia hemisphaerica)
TAGGAAAATTAAAGTGTTGTAAACTTTTATTGGAACATCATGCAGATGTT
AGTATCAAGATGCATCAAGGATGGACGGTGACTCATTGTGCGGTGGAAAA
CGGTCATTTGGAGATCTTGCGGTTATTATATGATCATTTTGCACCGATGT
TTGACAGAGATGACTTCAATGCTACACCAAAAGATATAGCAAGAGTTTAT
GGACATAAAGACTGCTACCAATTTCTAGATGAGTAAGTTATCTTTTTGTC
TAATCTAAGTTCTCCTTTTCTCCTATTGAAGAGAAATAATAAGTTTATGG
GGAGTACATTGCAGGAAATGCCTTAAAATGTAGACGTACAAATAAAAACT
CTAAATTCCATTCGCTTTGAGTGTTATTCTTATTATTCTGCTCCATGTTC
CAAAAGCTTTAAAATACCAAAAGTGAAATATCTAGTATTAAAGTAGAGTT
AATTTTTTTCCTCTGCATTTCTGCATTTTCCCCAAGATTACAGCTGAATT
ATCTTTTCAACTGCTTTTAAATTGTTACAATCGAATCATTCGTACAAGAA
AACGGCAAGTAAAACAAGCATTTAACCTCCTACAGACTATTTCTGAAATA
GCCCAATGTTGAAAAAAGGATTTTTTTATTGTTGGTCAAACGTCCTCAAT
TTTTTAACAATGTATGTTGGTATGTTATCTGGATTCTTTTTAATTCTTCA
GTGTTGAGAATGGACGTACAAAACGAAGAAGCATCGAAGAAAAGATAGAA
GAAAAATCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020749XLOC_020749Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035490-exon-sc0001318-1575043694:50179..50410TCONS_00035490-exon-sc0001318-1575043694:50179..50410Clytia hemisphaericaexon
TCONS_00035490-exon-sc0001318-1575043694:49650..49709TCONS_00035490-exon-sc0001318-1575043694:49650..49709Clytia hemisphaericaexon
TCONS_00035490-exon-sc0001318-1510915933:50179..50410TCONS_00035490-exon-sc0001318-1510915933:50179..50410Clytia hemisphaericaexon
TCONS_00035490-exon-sc0001318-1510915933:49650..49709TCONS_00035490-exon-sc0001318-1510915933:49650..49709Clytia hemisphaericaexon
TCONS_00035490-exon-sc0001318-1491911889:50179..50410TCONS_00035490-exon-sc0001318-1491911889:50179..50410Clytia hemisphaericaexon
TCONS_00035490-exon-sc0001318-1491911889:49650..49709TCONS_00035490-exon-sc0001318-1491911889:49650..49709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001318supercontigsc0001318:49650..50410 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.886246	2.16124	0	0.659478	0.752471	0	8.41461	0	2.44663	4.9759	1.44202	1.07263	7.57445	1.45383	6.25733	6.44271	2.95065	8.92564	2.84643	6.19968	6.75471	8.99873	1.65698	4.47182	0.000215605	0	16.4048	11.3316	3.14912	2.11855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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