TCONS_00035489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035489
Unique NameTCONS_00035489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035489 ID=TCONS_00035489|Name=TCONS_00035489|organism=Clytia hemisphaerica|type=transcript|length=867bp
TAGGAAAATTAAAGTGTTGTAAACTTTTATTGGAACATCATGCAGATGTT
AGTATCAAGATGCATCAAGGATGGACGGTGACTCATTGTGCGGTGGAAAA
CGGTCATTTGGAGATCTTGCGGTTATTATATGATCATTTTGCACCGATGT
TTGACAGAGATGACTTCAATGCTACACCAAAAGATATAGCAAGAGTTTAT
GGACATAAAGACTGCTACCAATTTCTAGATGATGTTGAGAATGGACGTAC
AAAACGAAGAAGCATCGAAGAAAAGATAGAAGAAAAACCTCTCCCTCTCA
TCATCTCTAACGAAATCACAAACGAAAGACCCAAAACAGCAAATCCTCCG
TAAAAACTGAAACTCACTATAAAGAGAAGATGGAAAACAACTATCTTGAG
ACATGTGGACCTGATTAGGCTACattaacaaaattttgaaacatctcaat
tTAATGGCCACGCAGTTGAATCAGCCAAGTGGGAATGGCTGATAAGGATT
GAAGTGAATCTCCTGTTTAGGATTTGGATTGAAAAAAGGTGGAGATGCTC
TATAATCATTCAAAAATCCTGGTGAAAAGTTATCCCATTGGGCAGAAAAT
GGATTTGAGCTGTAAAAGCTTATAATGAAAAGATATCTAGGATTGGAAAA
TGGATACAACATCAAAATGGCGTGCGACGTTGAGTACAAAACAAAGTTTT
CGATTTTAAAATAGCATCTCCAAAAGATGAAAACTGACAAGTCAATcttc
aaataaaataatttgattacctgttctgtaattttttgtaattttctgtA
CGTGGAAGTgtttaataatttaaaattatcgggaattttaaagaaataac
tTGGATACCTTCTGGaa
Run BLAST on NCBI

protein sequence of TCONS_00035489-protein

>TCONS_00035489-protein ID=TCONS_00035489-protein|Name=TCONS_00035489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
GKLKCCKLLLEHHADVSIKMHQGWTVTHCAVENGHLEILRLLYDHFAPMF
DRDDFNATPKDIARVYGHKDCYQFLDDVENGRTKRRSIEEKIEEKPLPLI
ISNEITNERPKTANPP
Run BLAST on NCBI

transcript from alignment at sc0001318:48506..50410-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035489 ID=TCONS_00035489|Name=TCONS_00035489|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at sc0001318:48506..50410- (Clytia hemisphaerica)
TAGGAAAATTAAAGTGTTGTAAACTTTTATTGGAACATCATGCAGATGTT
AGTATCAAGATGCATCAAGGATGGACGGTGACTCATTGTGCGGTGGAAAA
CGGTCATTTGGAGATCTTGCGGTTATTATATGATCATTTTGCACCGATGT
TTGACAGAGATGACTTCAATGCTACACCAAAAGATATAGCAAGAGTTTAT
GGACATAAAGACTGCTACCAATTTCTAGATGAGTAAGTTATCTTTTTGTC
TAATCTAAGTTCTCCTTTTCTCCTATTGAAGAGAAATAATAAGTTTATGG
GGAGTACATTGCAGGAAATGCCTTAAAATGTAGACGTACAAATAAAAACT
CTAAATTCCATTCGCTTTGAGTGTTATTCTTATTATTCTGCTCCATGTTC
CAAAAGCTTTAAAATACCAAAAGTGAAATATCTAGTATTAAAGTAGAGTT
AATTTTTTTCCTCTGCATTTCTGCATTTTCCCCAAGATTACAGCTGAATT
ATCTTTTCAACTGCTTTTAAATTGTTACAATCGAATCATTCGTACAAGAA
AACGGCAAGTAAAACAAGCATTTAACCTCCTACAGACTATTTCTGAAATA
GCCCAATGTTGAAAAAAGGATTTTTTTATTGTTGGTCAAACGTCCTCAAT
TTTTTAACAATGTATGTTGGTATGTTATCTGGATTCTTTTTAATTCTTCA
GTGTTGAGAATGGACGTACAAAACGAAGAAGCATCGAAGAAAAGATAGAA
GAAAAATCTCTCCCACTCATAATCTCTNTTCAGGGGTCTTAAATACCGTC
ATACCGACAAAATTTTGGGTCAAATACCGTAATACCGTCGGTGAAGGAAG
CCTAATACCGATACCGATATTTATATTTATGTTTTTTTTTTTTAAATAAT
GTGCAGTATGTAAAATATTTGTTTATATATCGTAAAATTTAGCTTATTTT
GAATAACCTCACCATGACAATAGAAAGAGAAAATTTTTCTGCATGAAACT
CATGAAGAAACTAAAAGATAAATGTAAATAGTTTTATACCGAAATACCGT
TTTTTATTGATAAAAATATCGAAGTATGTACCGACAAAAAAAACAGGCAA
TTTACCGATACAGGTAGAAAATGAAATACCGTAATCCCGTCGTTTTTTTC
TCGTAATACCGATTTACCGGGGGTAAAAAGGCCCAATACCGTCATACCGT
AAAAGTGAAACCCCCCCCCCTTTTAACAATGTATGTTGGTATGTTATCTG
GATTTTTTTTAATTCTTCAGTGTTGAGAATGGACGTACAAAACGAAGAAG
CATCGAAGAAAAGATAGAAGAAAAACCTCTCCCTCTCATCATCTCTAACG
AAATCACAAACGAAAGACCCAAAACAGCAAATCCTCCGTAAAAACTGAAA
CTCACTATAAAGAGAAGATGGAAAACAACTATCTTGAGACATGTGGACCT
GATTAGGCTACATTAACAAAATTTTGAAACATCTCAATTTAATGGCCACG
CAGTTGAATCAGCCAAGTGGGAATGGCTGATAAGGATTGAAGTGAATCTC
CTGTTTAGGATTTGGATTGAAAAAAGGTGGAGATGCTCTATAATCATTCA
AAAATCCTGGTGAAAAGTTATCCCATTGGGCAGAAAATGGATTTGAGCTG
TAAAAGCTTATAATGAAAAGATATCTAGGATTGGAAAATGGATACAACAT
CAAAATGGCGTGCGACGTTGAGTACAAAACAAAGTTTTCGATTTTAAAAT
AGCATCTCCAAAAGATGAAAACTGACAAGTCAATCTTCAAATAAAATAAT
TTGATTACCTGTTCTGTAATTTTTTGTAATTTTCTGTACGTGGAAGTGTT
TAATAATTTAAAATTATCGGGAATTTTAAAGAAATAACTTGGATACCTTC
TGGAA

Coding sequence (CDS) from alignment at sc0001318:48506..50410-

>TCONS_00035489 ID=TCONS_00035489|Name=TCONS_00035489|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0001318:48506..50410- (Clytia hemisphaerica)
TGTTGAGAATGGACGTACAAAACGAAGAAGCATCGAAGAAAAGATAGAAG
AAAAACCTCTCCCTCTCATCATCTCTAACGAAATCACAAACGAAAGACCC
AAAACAGCAAATCCTCCGTAAGGAAAATTAAAGTGTTGTAAACTTTTATT
GGAACATCATGCAGATGTTAGTATCAAGATGCATCAAGGATGGACGGTGA
CTCATTGTGCGGTGGAAAACGGTCATTTGGAGATCTTGCGGTTATTATAT
GATCATTTTGCACCGATGTTTGACAGAGATGACTTCAATGCTACACCAAA
AGATATAGCAAGAGTTTATGGACATAAAGACTGCTACCAATTTCTAGATG
ATGTTGAGAATGGACGTACAAAACGAAGAAGCATCGAAGAAAAGATAGAA
GAAAAACCTCTCCCTCTCATCATCTCTAACGAAATCACAAACGAAAGACC
CAAAACAGCAAATCCTCCGTAAGGAAAATTAAAGTGTTGTAAACTTTTAT
TGGAACATCATGCAGATGTTAGTATCAAGATGCATCAAGGATGGACGGTG
ACTCATTGTGCGGTGGAAAACGGTCATTTGGAGATCTTGCGGTTATTATA
TGATCATTTTGCACCGATGTTTGACAGAGATGACTTCAATGCTACACCAA
AAGATATAGCAAGAGTTTATGGACATAAAGACTGCTACCAATTTCTAGAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020749XLOC_020749Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035489-proteinTCONS_00035489-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035489-exon-sc0001318-1575043694:50179..50410TCONS_00035489-exon-sc0001318-1575043694:50179..50410Clytia hemisphaericaexon
TCONS_00035489-exon-sc0001318-1575043694:48506..49140TCONS_00035489-exon-sc0001318-1575043694:48506..49140Clytia hemisphaericaexon
TCONS_00035489-exon-sc0001318-1510915933:50179..50410TCONS_00035489-exon-sc0001318-1510915933:50179..50410Clytia hemisphaericaexon
TCONS_00035489-exon-sc0001318-1510915933:48506..49140TCONS_00035489-exon-sc0001318-1510915933:48506..49140Clytia hemisphaericaexon
TCONS_00035489-exon-sc0001318-1491911889:50179..50410TCONS_00035489-exon-sc0001318-1491911889:50179..50410Clytia hemisphaericaexon
TCONS_00035489-exon-sc0001318-1491911889:48506..49140TCONS_00035489-exon-sc0001318-1491911889:48506..49140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001318supercontigsc0001318:48506..50410 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127248	0.409222	0.105299	0.284394	2.50333	1.26796	4.64984	5.28921	5.62127	2.89689	4.76556	4.14795	6.54495	6.84678	3.27522	4.17227	3.4631	3.59391	11.2195	9.07514	9.2125	9.26187	6.03183	5.74013	7.95323	6.02059	30.5386	33.9656	8.32071	6.7452
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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