TCONS_00035487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035487
Unique NameTCONS_00035487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035487 ID=TCONS_00035487|Name=TCONS_00035487|organism=Clytia hemisphaerica|type=transcript|length=917bp
GCCTGGTGCGTAAAAAACAATATCACGTGAGTAAAATCGGTAAATTGATT
GGACGAAAATGATGAGCTCTGATGTTGTCATTTTGGGgagagaaagtgaa
agtagcttggaaatttttttttcttgactcCATACTGCCATATGGAGCAA
AAACTAAAGGTGTCTGAGGAAAGAGCAAGAAACATTCTGAAGGCGATACT
TAATGGCAGAACAAAGGAACAGAGACTCGAAGCCTTGTTTGACAAATTTG
AAGATTGGATTGTATTAGGACTGCTTATGATtCGGTGATTAAAATGTATC
TATGGACAAGGGTAACACAGTTCGATCTGGTAATCCTAGAGCACTTGGCG
ACACCAAACAACGGTATGAGCAAATCAAAGAATTTTTCATAATGCAGCTG
GAAGCTTTGGTTGTAAGTGCTTTCATGAAGCAAGAAAACATGAATGTGTG
AATAATGATTGCATACCTGAACACATACAAGATCCTAATGCCAAGAAACG
TTGGCTCAATTGTCGAATCTCAATGATGTTGGAAATATACGTAATACCAC
ATTTCAGAACATTGATAGGCTCAATTAAGAAGGAAGGAGATGTTGACGAA
AATGATGAAACTAACCAAGCACAAAATGAATCTTCTGATGCCAATGTTTA
CAAGATTTCGAAAGCATACCAAGGCATCAGAGAAATTTGTGATTCGATGC
TCCAGAATGTAGATGTCTTACAATCGTCTGGACACCACTCAAACACACAC
AAAAATGAAATGTTCGAATCAGTATTGAAAGAGTTAACAAAGACAACAAC
AACTTCTCGAGTGAGCCTAATAAAACGCTTACGACccaatttaaaaactt
taacaaaACAGGttcaagaattaaaaaaaatggttCCTTGGATCAAGGAA
CATGTACGAGACTGGTA
Run BLAST on NCBI

protein sequence of TCONS_00035487-protein

>TCONS_00035487-protein ID=TCONS_00035487-protein|Name=TCONS_00035487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MMLEIYVIPHFRTLIGSIKKEGDVDENDETNQAQNESSDANVYKISKAYQ
GIREICDSMLQNVDVLQSSGHHSNTHKNEMFESVLKELTKTTTTSRVSLI
KRLRPNLKTLTKQVQELKKMVPWIKEHVRDW
Run BLAST on NCBI

transcript from alignment at sc0001318:43109..45857-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035487 ID=TCONS_00035487|Name=TCONS_00035487|organism=Clytia hemisphaerica|type=transcript|length=2749bp|location=Sequence derived from alignment at sc0001318:43109..45857- (Clytia hemisphaerica)
GCCTGGTGCGTAAAAAACAATATCACGTGAGTAAAATCGGTAAATTGATT
GGACGAAAATGATGAGCTCTGATGTTGTCATTTTGGGGAGAGAAAGTGAA
AGTAGCTTGGAAATTTTTTTTTCTTGACTCCATACTGCCATATGGAGCAA
AAACTAAAGGTGTCTGAGGAAAGAGCAAGAAACATTCTGAAGGCGATACT
TAATGGCAGAACAAAGGAACAGAGACTCGAAGCCTTGTTTGACAAATTTG
AAGATTGGATTGTATTAGGACTGCTTATGATGTAAGAAACAGAACTATTT
TTTTAAAGTTTTTAGTGTGGTAAAAAAGATTTCTATAATTGTGTGATATT
TTTAACTTGTAACATTCTTGTTCCAACTCCTGGCTGCTCAATTTGCTTGT
CAATTAGGCAGCTATTCTGCAATGAAAATAATTTTCCACAGATTCAGAAA
AAGAGTACTTAGGGCAGGAGGTATATCATGATATTTACTATATTGCTCTC
AATAACACATACCATTAAATTTTTATTCAGTCGGTGATTAAAATGTATCT
ATGGACAAGGGTAACACAGTTCGATCTGGTAATCCTAGAGCACTTGGCGA
CACCAAACAACGGTATGAGCAAATCAAAGAATTTTTCATAATGCAGCTGG
AAGCTTTGGTTGTAAGTGCTTTCATGAAGCAAGAAAACATGAATGTGTGA
ATAATGATTGCATACCTGAACACATACAAGATCCTAATGCCAAGAAACGT
TGGCTCAATTGTCGAATCTCAATGATGTTGGAAATATACGTAATACCACA
TTTCAGGTAAGCTTGTAATATTTCCTTTCTTTTTATATACAAGGAGATTT
TACAGGTGAAAATAATATTCAAAGATTTAACAAACATCTCTTGAGCCTTT
AGGAGATAAATTTGCACACTAAATAAAGATGAATTGGGCTCTTCCAGAAA
AAAATTGTACACCCCGGGTGGAGGATATATTGTCCGGGGGGTACTGTAGC
AAAAAATCATCAAAATTTGCCTTGTCAGGGGTGTAAATTTGCTCTGCCCG
GGGGTAATTTGGTGTGTCTGGGGGTCAGCAGATGCTTGTCCGGGGGTAAA
ACCTATTGTCCGGGGGGCCAAAAGTCACCCTGTCCGGGGGGGGGGGGGAA
ATCACTAAAAATTGTTATATCATCCACCCCCCATGTACAATTTTTTTCTG
GCGAAGAGCCCATTACACATTTTTGTCTTTATGCAACCAAATTGCTAAGG
CTCCAGCCCTAAAAATGGTCAAAAAATTAAGCAATTTGGCTTAGCAACCA
CATCCCTGAAACTGAGTGTGAGCTGAAAATCAGGCATAATTTGGTATCAA
AATGTCTAACAAAGACATTCTGTTAGCTAACTTTACGTATTTTGTGCATA
AAGTGAGGTAAAAAGTCAAAACTTTGGGGGTTGCGTAGCAGCAATTTTAG
CTCAAAATTCATTGGCAATTTTTAGGCCGAAATCTTAAAAATCCTTAGCA
ATTCTAGCCCTGAGCCAAAAATTAGGGTTTCTCATAAAAAAATTGTGTAG
ATAGACATACATAGCATTATTTCAATTTTCATTATAGAACATTGATAGGC
TCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATGAAACTAACCAAGC
ACAAAATGAATCNATAATATTCAAAGATTTAACAAACATCTTTTGAGCCT
TTAGGAGATAAATTTGCACACTAAATAAAGATGAATTGGGCTCTTCCAGA
AAAAAATTGTACACCCCGGGTGGAGGATATATTGTCCGGGGGGTACTGTA
GCAAAAAATCATCAAAATTTGCCTTGTCAGGGGTGTAAATTTGCTCTGCC
CGGGGGTAATTTGGTGTGTCTGGGGGTCAGCAGATGCTTGTCCGGGGGTA
AAACCTATTGTCCGGGGGGCCAAAAGTCACCCTGTCCGGGGGGGGGGGGG
AAATCACTAAAAATTGTTATATCATCCACCCCCCATGTACAATTTTTTTC
TGGCGAAGAGCCCATTACACATTTTTGTCTTTATGCAACCAAATTGCTAA
GGCTCCAGCCCTAAAAATGGTCAAAAAATTAAGCAATTTGGCTTAGCAAC
CACATCCCTGAAACTGAGTGTGAGCTGAAAATCAGGCATAATTTGGTATC
AAAATGTCTAACAAAGACATTCTGTTAGCTAACTTTACGTATTTTGTGCA
TAAAGTGAGGTAAAAAGTCAAAACTTTGGGGGTTGCGTAGCAGCAATTTT
AGCTCAAAATTCATTGGCAATTTTTAGGCCGAAATCTTAAAAATCCTTAG
CAATTCTAGCCCTGAGCCAAAAATTAGGGTTTCTCATAAAAAAATTGTGT
AGATAGACATACATAGCATTATTTCAATTTTCATTATAGAACATTGATAG
GCTCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATGAAACTAACCAA
GCACAAAATGAATCTTCTGATGCCAATGTTTACAAGATTTCGAAAGCATA
CCAAGGCATCAGAGAAATTTGTGATTCGATGCTCCAGAATGTAGATGTCT
TACAATCGTCTGGACACCACTCAAACACACACAAAAATGAAATGTTCGAA
TCAGTATTGAAAGAGTTAACAAAGACAACAACAACTTCTCGAGTGAGCCT
AATAAAACGCTTACGACCCAATTTAAAAACTTTAACAAAACAGGTTCAAG
AATTAAAAAAAATGGTTCCTTGGATCAAGGAACATGTACGAGACTGGTA

Coding sequence (CDS) from alignment at sc0001318:43109..45857-

>TCONS_00035487 ID=TCONS_00035487|Name=TCONS_00035487|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0001318:43109..45857- (Clytia hemisphaerica)
AACATTGATAGGCTCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATG
AAACTAACCAAGCACAAAATGAATCTTCTGATGCCAATGTTTACAAGATT
TCGAAAGCATACCAAGGCATCAGAGAAATTTGTGATTCGATGCTCCAGAA
TGTAGATGTCTTACAATCGTCTGGACACCACTCAAACACACACAAAAATG
AAATGTTCGAATCAGTATTGAAAGAGTTAACAAAGACAACAACAACTTCT
CGAGTGAGCCTAATAAAACGCTTACGACCCAATTTAAAAACTTTAACAAA
ACAGGTTCAAGAATTAAAAAAAATGGTTCCTTGGATCAAGGAACATGTAC
GAGACTGGATGATGTTGGAAATATACGTAATACCACATTTCAGAACATTG
ATAGGCTCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATGAAACTAA
CCAAGCACAAAATGAATCTTCTGATGCCAATGTTTACAAGATTTCGAAAG
CATACCAAGGCATCAGAGAAATTTGTGATTCGATGCTCCAGAATGTAGAT
GTCTTACAATCGTCTGGACACCACTCAAACACACACAAAAATGAAATGTT
CGAATCAGTATTGAAAGAGTTAACAAAGACAACAACAACTTCTCGAGTGA
GCCTAATAAAACGCTTACGACCCAATTTAAAAACTTTAACAAAACAGGTT
CAAGAATTAAAAAAAATGGTTCCTTGGATCAAGGAACATGTACGAGACTG
GATGATGTTGGAAATATACGTAATACCACATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020748XLOC_020748Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035487-proteinTCONS_00035487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035487-exon-sc0001318-1575043694:45577..45857TCONS_00035487-exon-sc0001318-1575043694:45577..45857Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1575043694:45052..45327TCONS_00035487-exon-sc0001318-1575043694:45052..45327Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1575043694:43109..43468TCONS_00035487-exon-sc0001318-1575043694:43109..43468Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1510915933:45577..45857TCONS_00035487-exon-sc0001318-1510915933:45577..45857Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1510915933:45052..45327TCONS_00035487-exon-sc0001318-1510915933:45052..45327Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1510915933:43109..43468TCONS_00035487-exon-sc0001318-1510915933:43109..43468Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1491911889:45577..45857TCONS_00035487-exon-sc0001318-1491911889:45577..45857Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1491911889:45052..45327TCONS_00035487-exon-sc0001318-1491911889:45052..45327Clytia hemisphaericaexon
TCONS_00035487-exon-sc0001318-1491911889:43109..43468TCONS_00035487-exon-sc0001318-1491911889:43109..43468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001318supercontigsc0001318:43109..45857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0158515	0	0.0533994	0	0.180939	0	0.20792	0.304608	0	0	0.10383	0.192223	0.150133	0.0376172	0.0771129	0	0.167107	0.0218624	0.0708952	0	0.0522349	0.0557093	0.324319	0	0	0.607722	0.0540036
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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