TCONS_00035484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035484
Unique NameTCONS_00035484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035484 ID=TCONS_00035484|Name=TCONS_00035484|organism=Clytia hemisphaerica|type=transcript|length=406bp
TTTAGTTTTAGGAAATTGAAAATACATCGGAACTCTATAATCAAATGTCG
TTTGTGATTCGATCTGAGGGCGATTTTGAAAATTAACACTAAAAATAAAT
AAGGAAAGTTTTTTTAGACATATCCCTTTATTAACGGAggataaatttat
caaaaattaagNATGTTACTATATTCCAACCAATTTGTAATATAAATGAC
ccatagtagaaccaaacagcataagtaagaaatgctatgagtcagaaaca
taacgagctggaaccaaaaattgacaggtaacaacgtacttAGGAATTTT
CCCAacggtttaacaaaggatatcgtgatccaaaattgtttacattatat
ggatttaccagtaatctagaagctgtaacagcgCCGTGTAAAGGATGGAA
AATGAT
Run BLAST on NCBI

transcript from alignment at sc0001316:493..898

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035484 ID=TCONS_00035484|Name=TCONS_00035484|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at sc0001316:493..898 (Clytia hemisphaerica)
ATCATTTTCCATCCTTTACACGGcgctgttacagcttctagattactggt
aaatccatataatgtaaacaattttggatcacgatatcctttgttaaacc
gtTGGGAAAATTCCTaagtacgttgttacctgtcaatttttggttccagc
tcgttatgtttctgactcatagcatttcttacttatgctgtttggttcta
ctatggGTCATTTATATTACAAATTGGTTGGAATATAGTAACATNcttaa
tttttgataaatttatccTCCGTTAATAAAGGGATATGTCTAAAAAAACT
TTCCTTATTTATTTTTAGTGTTAATTTTCAAAATCGCCCTCAGATCGAAT
CACAAACGACATTTGATTATAGAGTTCCGATGTATTTTCAATTTCCTAAA
ACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020745XLOC_020745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035484-exon-sc0001316-1491911889:493..898TCONS_00035484-exon-sc0001316-1491911889:493..898Clytia hemisphaericaexon
TCONS_00035484-exon-sc0001316-1510915933:493..898TCONS_00035484-exon-sc0001316-1510915933:493..898Clytia hemisphaericaexon
TCONS_00035484-exon-sc0001316-1575043694:493..898TCONS_00035484-exon-sc0001316-1575043694:493..898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001316supercontigsc0001316:493..898 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.38369	10.7126	5.91331	3.98983	26.229	10.3633	8.56677	11.705	9.8643	13.5344	27.0034	35.1421	12.9354	13.4335	7.77184	6.25528	9.19312	5.54274	23.3556	20.2331	22.4616	34.9063	13.8347	12.9532	2.70697	3.62385	28.398	35.3144	18.3895	16.2922
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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