TCONS_00035471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035471
Unique NameTCONS_00035471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035471 ID=TCONS_00035471|Name=TCONS_00035471|organism=Clytia hemisphaerica|type=transcript|length=476bp
AATCTAGTGGTTCAATGATTTGTAGATTTTTGTCATCAAGATGCTCTTGT
AAATTATTCCATTGACGTGAAGCTAGCTGTGTGAGAGAGTGGAGGCCAAA
GGTGGTTGTATTGACGTTCCTGACAAAGTGGAGGCTGGGATGGTTAGCTC
TAGTCCCAATGTCATGAGGAATTGTAGAAAAGGTAAAAGTAGAAAGACAG
TGAGAAGGAAGGTATCTGTTCAGGTAGCGGTATATGAACATAATGTTGAG
TGTTTCAACGAGATCAaagaattttaagattttaagttcattATAGGTGG
GAGTGACAGAAGCCCTTGGTTCTTGGAAAGTCATAATCCTGATGGCAGTG
TTTTGTAGGACTTGGATTCTGTGAGTGACAGTGTTATCACGGAGGCCCCA
AGTTTGACAAGCATAGCGGATGTGAGAGGAGAAGATAGCATGGTAGACAT
TGATAAGGTTTGGAAGAGGGAGATAG
Run BLAST on NCBI

protein sequence of TCONS_00035471-protein

>TCONS_00035471-protein ID=TCONS_00035471-protein|Name=TCONS_00035471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
YLPLPNLINVYHAIFSSHIRYACQTWGLRDNTVTHRIQVLQNTAIRIMTF
QEPRASVTPTYNELKILKFFDLVETLNIMFIYRYLNRYLPSHCLSTFTFS
TIPHDIGTRANHPSLHFVRNVNTTTFGLHSLTQLASRQWNNLQEHLDDKN
LQIIEPLD
Run BLAST on NCBI

transcript from alignment at sc0001315:70245..70720

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035471 ID=TCONS_00035471|Name=TCONS_00035471|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at sc0001315:70245..70720 (Clytia hemisphaerica)
CTATCTCCCTCTTCCAAACCTTATCAATGTCTACCATGCTATCTTCTCCT
CTCACATCCGCTATGCTTGTCAAACTTGGGGCCTCCGTGATAACACTGTC
ACTCACAGAATCCAAGTCCTACAAAACACTGCCATCAGGATTATGACTTT
CCAAGAACCAAGGGCTTCTGTCACTCCCACCTATaatgaacttaaaatct
taaaattcttTGATCTCGTTGAAACACTCAACATTATGTTCATATACCGC
TACCTGAACAGATACCTTCCTTCTCACTGTCTTTCTACTTTTACCTTTTC
TACAATTCCTCATGACATTGGGACTAGAGCTAACCATCCCAGCCTCCACT
TTGTCAGGAACGTCAATACAACCACCTTTGGCCTCCACTCTCTCACACAG
CTAGCTTCACGTCAATGGAATAATTTACAAGAGCATCTTGATGACAAAAA
TCTACAAATCATTGAACCACTAGATT

Coding sequence (CDS) from alignment at sc0001315:70245..70720

>TCONS_00035471 ID=TCONS_00035471|Name=TCONS_00035471|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0001315:70245..70720 (Clytia hemisphaerica)
TATCTCCCTCTTCCAAACCTTATCAATGTCTACCATGCTATCTTCTCCTC
TCACATCCGCTATGCTTGTCAAACTTGGGGCCTCCGTGATAACACTGTCA
CTCACAGAATCCAAGTCCTACAAAACACTGCCATCAGGATTATGACTTTC
CAAGAACCAAGGGCTTCTGTCACTCCCACCTATaatgaacttaaaatctt
aaaattcttTGATCTCGTTGAAACACTCAACATTATGTTCATATACCGCT
ACCTGAACAGATACCTTCCTTCTCACTGTCTTTCTACTTTTACCTTTTCT
ACAATTCCTCATGACATTGGGACTAGAGCTAACCATCCCAGCCTCCACTT
TGTCAGGAACGTCAATACAACCACCTTTGGCCTCCACTCTCTCACACAGC
TAGCTTCACGTCAATGGAATAATTTACAAGAGCATCTTGATGACAAAAAT
CTACAAATCATTGAACCACTAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020741XLOC_020741Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035471-proteinTCONS_00035471-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035471-exon-sc0001315-1491911889:70245..70720TCONS_00035471-exon-sc0001315-1491911889:70245..70720Clytia hemisphaericaexon
TCONS_00035471-exon-sc0001315-1510915933:70245..70720TCONS_00035471-exon-sc0001315-1510915933:70245..70720Clytia hemisphaericaexon
TCONS_00035471-exon-sc0001315-1575043694:70245..70720TCONS_00035471-exon-sc0001315-1575043694:70245..70720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001315supercontigsc0001315:70245..70720 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233769	0.880142	1.6309	0.949863	0.709598	1.60401	1.01609	0.197595	0.548549	1.45395	0.269241	0.663564	1.55443	1.28429	0.351044	1.00521	1.03653	0.825696	0.939793	0.593108	2.47634	0.757426	0.26155	0.227662	1.41366	1.06179	1.0402	1.36113	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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