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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035468 ID=TCONS_00035468|Name=TCONS_00035468|organism=Clytia hemisphaerica|type=transcript|length=1569bp
aaaaatattatagccctgcaatacagcggcttctttttttaagaaagccG
ATTGGTCAATTGGCGTTCGAATGTGTCACGTGACCGGTCTCTATTTTCAC
GCAGTGAccggttttcaaaaaaatgaaaacaaaaaataatttcgaacaAA
AATAGACGAGAAAGCGCGAAAGGACAAAATGTCGATTGAAAACCCTTCTT
TCGAGCTGATTGACTACTCTCTTTTTGGTAATGAAATAAAAGATGAAAGt
ggtgattttcaaaaattcatcagTGATCAACAGGCGAAGAATACAAAATA
TAACACGAACTTTGCAATGAACAGGTTCAACAAATTTTGCTCAGAAATCA
AAGAGACAAGAAGAATTGAGGAGTTATTGCTCTGCAAAGCTGATTTGAAT
ACAATCCTTTCTAAATTTTACATGACAGCTTTGAAGCGAGACGGAGATGA
GTATGAGCCTGATAGTTTAACAACTCTTCAAAGAGGAATCCAAAGATATT
TAGACGACAATAATTTGTTGGTGAACATTATAGAGGACAAAGAATTCGAA
CAGTCGAGAAAGGTTTTGTCAGCCAAACGAAAATTACTTACCAAACAAGG
TAAGGGAGGAAAACCCAATGCTACAAGAGAAGTCGAACAGTTTGAAATTG
ATAAACTTTATGACGAAGGATTTTTTGGAAGAGGAAACCCTTTGTCACTG
CAAAGAACAATGTGGTGGAACCTCTCACTTCATTTTGGTTTTCGTGCAAG
AGACGAATCAAGAAAATTACGTTGGGGTGATGTTGTTGTGGAAAAAGATC
CCGTGAAAGGAGAATGTCTTGTTTTAATTAAAGAGAGAGGTTCAAAGACA
AGACAAGGAAAGGAAAATGAAGAGAAGAGATTTTACAACCCTTGTGTTTA
TGCAATCGAAGGAGATCGTTGCCCTGTTGATTTGTACAAAGAATTCAAAG
AAAGAAGACCCTCTGAGGCGTTGAAAGATGAAGCACCCTTTTATTTATCG
TTAAGACGAAAAGTtgttttccaaaaagaaaagatatgGTTTATGTCCTC
ACCTTTGGGAAAGAACAAAATCGGCGAGTTTATGAGAGAACATGGATTGG
ATGGAGTGAAAAAAGTCGCAAACCATTCGGTAAGAAAGACTGGGATTGGA
AAACTTTTAGATGCTGAAGTGCCTGAAGTATTTGTTGCCCAACACAGTGG
TCATAAAAACATTGATTCTTTACGAAGCTATAAGTCAGCCAGCAAAAACC
AACGACACAAAATGTCAAATATTTTGAGTAACACTGAAAACCATAATACT
AGCACAACTTCTACAATAACTACAGAATCGAGGattaattcaatattttc
tgGGGGAACATTCAATGGTTGTacttttaattttgcaaccgaATCACCAA
CAAAGAAACTCAAAATATAAGGAATTTTTTTGTAATACAAAATGtttgtg
tttttgattttgttttgtttttgtcgaGACGTGAAATCGAACgttgtctt
ttgaaaatagttttagTGAATCGATTTCTCTTTCATTTTGTCTtctattg
ttttgttgttgaaaataac Run BLAST on NCBI protein sequence of TCONS_00035468-protein >TCONS_00035468-protein ID=TCONS_00035468-protein|Name=TCONS_00035468-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MSIENPSFELIDYSLFGNEIKDESGDFQKFISDQQAKNTKYNTNFAMNRF
NKFCSEIKETRRIEELLLCKADLNTILSKFYMTALKRDGDEYEPDSLTTL
QRGIQRYLDDNNLLVNIIEDKEFEQSRKVLSAKRKLLTKQGKGGKPNATR
EVEQFEIDKLYDEGFFGRGNPLSLQRTMWWNLSLHFGFRARDESRKLRWG
DVVVEKDPVKGECLVLIKERGSKTRQGKENEEKRFYNPCVYAIEGDRCPV
DLYKEFKERRPSEALKDEAPFYLSLRRKVVFQKEKIWFMSSPLGKNKIGE
FMREHGLDGVKKVANHSVRKTGIGKLLDAEVPEVFVAQHSGHKNIDSLRS
YKSASKNQRHKMSNILSNTENHNTSTTSTITTESRINSIFSGGTFNGCTF
NFATESPTKKLKI Run BLAST on NCBI transcript from alignment at sc0001315:51227..52795 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035468 ID=TCONS_00035468|Name=TCONS_00035468|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at sc0001315:51227..52795 (Clytia hemisphaerica)
gttattttcaacaacaaaacaatagaAGACAAAATGAAAGAGAAATCGAT
TCActaaaactattttcaaaagacaacGTTCGATTTCACGTCtcgacaaa
aacaaaacaaaatcaaaaacacaaaCATTTTGTATTACAAAAAAATTCCT
TATATTTTGAGTTTCTTTGTTGGTGATtcggttgcaaaattaaaagtACA
ACCATTGAATGTTCCCCcagaaaatattgaattaatCCTCGATTCTGTAG
TTATTGTAGAAGTTGTGCTAGTATTATGGTTTTCAGTGTTACTCAAAATA
TTTGACATTTTGTGTCGTTGGTTTTTGCTGGCTGACTTATAGCTTCGTAA
AGAATCAATGTTTTTATGACCACTGTGTTGGGCAACAAATACTTCAGGCA
CTTCAGCATCTAAAAGTTTTCCAATCCCAGTCTTTCTTACCGAATGGTTT
GCGACTTTTTTCACTCCATCCAATCCATGTTCTCTCATAAACTCGCCGAT
TTTGTTCTTTCCCAAAGGTGAGGACATAAACcatatcttttctttttgga
aaacaACTTTTCGTCTTAACGATAAATAAAAGGGTGCTTCATCTTTCAAC
GCCTCAGAGGGTCTTCTTTCTTTGAATTCTTTGTACAAATCAACAGGGCA
ACGATCTCCTTCGATTGCATAAACACAAGGGTTGTAAAATCTCTTCTCTT
CATTTTCCTTTCCTTGTCTTGTCTTTGAACCTCTCTCTTTAATTAAAACA
AGACATTCTCCTTTCACGGGATCTTTTTCCACAACAACATCACCCCAACG
TAATTTTCTTGATTCGTCTCTTGCACGAAAACCAAAATGAAGTGAGAGGT
TCCACCACATTGTTCTTTGCAGTGACAAAGGGTTTCCTCTTCCAAAAAAT
CCTTCGTCATAAAGTTTATCAATTTCAAACTGTTCGACTTCTCTTGTAGC
ATTGGGTTTTCCTCCCTTACCTTGTTTGGTAAGTAATTTTCGTTTGGCTG
ACAAAACCTTTCTCGACTGTTCGAATTCTTTGTCCTCTATAATGTTCACC
AACAAATTATTGTCGTCTAAATATCTTTGGATTCCTCTTTGAAGAGTTGT
TAAACTATCAGGCTCATACTCATCTCCGTCTCGCTTCAAAGCTGTCATGT
AAAATTTAGAAAGGATTGTATTCAAATCAGCTTTGCAGAGCAATAACTCC
TCAATTCTTCTTGTCTCTTTGATTTCTGAGCAAAATTTGTTGAACCTGTT
CATTGCAAAGTTCGTGTTATATTTTGTATTCTTCGCCTGTTGATCActga
tgaatttttgaaaatcaccaCTTTCATCTTTTATTTCATTACCAAAAAGA
GAGTAGTCAATCAGCTCGAAAGAAGGGTTTTCAATCGACATTTTGTCCTT
TCGCGCTTTCTCGTCTATTTTtgttcgaaattattttttgttttcatttt
tttgaaaaccggTCACTGCGTGAAAATAGAGACCGGTCACGTGACACATT
CGAACGCCAATTGACCAATCggctttcttaaaaaaagaagccgctgtatt
gcagggctataatattttt Coding sequence (CDS) from alignment at sc0001315:51227..52795 >TCONS_00035468 ID=TCONS_00035468|Name=TCONS_00035468|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at sc0001315:51227..52795 (Clytia hemisphaerica)
TTATATTTTGAGTTTCTTTGTTGGTGATtcggttgcaaaattaaaagtAC
AACCATTGAATGTTCCCCcagaaaatattgaattaatCCTCGATTCTGTA
GTTATTGTAGAAGTTGTGCTAGTATTATGGTTTTCAGTGTTACTCAAAAT
ATTTGACATTTTGTGTCGTTGGTTTTTGCTGGCTGACTTATAGCTTCGTA
AAGAATCAATGTTTTTATGACCACTGTGTTGGGCAACAAATACTTCAGGC
ACTTCAGCATCTAAAAGTTTTCCAATCCCAGTCTTTCTTACCGAATGGTT
TGCGACTTTTTTCACTCCATCCAATCCATGTTCTCTCATAAACTCGCCGA
TTTTGTTCTTTCCCAAAGGTGAGGACATAAACcatatcttttctttttgg
aaaacaACTTTTCGTCTTAACGATAAATAAAAGGGTGCTTCATCTTTCAA
CGCCTCAGAGGGTCTTCTTTCTTTGAATTCTTTGTACAAATCAACAGGGC
AACGATCTCCTTCGATTGCATAAACACAAGGGTTGTAAAATCTCTTCTCT
TCATTTTCCTTTCCTTGTCTTGTCTTTGAACCTCTCTCTTTAATTAAAAC
AAGACATTCTCCTTTCACGGGATCTTTTTCCACAACAACATCACCCCAAC
GTAATTTTCTTGATTCGTCTCTTGCACGAAAACCAAAATGAAGTGAGAGG
TTCCACCACATTGTTCTTTGCAGTGACAAAGGGTTTCCTCTTCCAAAAAA
TCCTTCGTCATAAAGTTTATCAATTTCAAACTGTTCGACTTCTCTTGTAG
CATTGGGTTTTCCTCCCTTACCTTGTTTGGTAAGTAATTTTCGTTTGGCT
GACAAAACCTTTCTCGACTGTTCGAATTCTTTGTCCTCTATAATGTTCAC
CAACAAATTATTGTCGTCTAAATATCTTTGGATTCCTCTTTGAAGAGTTG
TTAAACTATCAGGCTCATACTCATCTCCGTCTCGCTTCAAAGCTGTCATG
TAAAATTTAGAAAGGATTGTATTCAAATCAGCTTTGCAGAGCAATAACTC
CTCAATTCTTCTTGTCTCTTTGATTTCTGAGCAAAATTTGTTGAACCTGT
TCATTGCAAAGTTCGTGTTATATTTTGTATTCTTCGCCTGTTGATCActg
atgaatttttgaaaatcaccaCTTTCATCTTTTATTTCATTACCAAAAAG
AGAGTAGTCAATCAGCTCGAAAGAAGGGTTTTCAATCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035468-exon-sc0001315-1491911889:51227..52795 | TCONS_00035468-exon-sc0001315-1491911889:51227..52795 | Clytia hemisphaerica | exon |
| TCONS_00035468-exon-sc0001315-1510915933:51227..52795 | TCONS_00035468-exon-sc0001315-1510915933:51227..52795 | Clytia hemisphaerica | exon |
| TCONS_00035468-exon-sc0001315-1575043694:51227..52795 | TCONS_00035468-exon-sc0001315-1575043694:51227..52795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001315 | supercontig | sc0001315:51227..52795 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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