TCONS_00035467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035467
Unique NameTCONS_00035467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035467 ID=TCONS_00035467|Name=TCONS_00035467|organism=Clytia hemisphaerica|type=transcript|length=329bp
TCTTCCAATGTCATGTTGGCCAAGGCACCACTTCTTGAGGCATTGTCCAG
ACACAATGAGGTTAACAAATAATCTCTTCCCGATACAAAGTTGTCATTGA
GATGTGTGCCTGAACATGCTTCAATGCGAAAACTTTTCGACTAGCCTTCA
CTTGTGAAGACTCGTCGAACTTGTTAATATCGTCAGAGGTGAGCATCTCT
TGCAGTTGTTTTAATTCATTTACGCACTGACGTTCCTTTTGATGCTTGCA
ATATACGGTTATCCAACCGTCCATAATGTTTTTCATTTCCTGGCACTTAT
CTTCGAATTCCTTCAAGCCATGCGGATGG
Run BLAST on NCBI

transcript from alignment at sc0001315:34481..34809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035467 ID=TCONS_00035467|Name=TCONS_00035467|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0001315:34481..34809 (Clytia hemisphaerica)
CCATCCGCATGGCTTGAAGGAATTCGAAGATAAGTGCCAGGAAATGAAAA
ACATTATGGACGGTTGGATAACCGTATATTGCAAGCATCAAAAGGAACGT
CAGTGCGTAAATGAATTAAAACAACTGCAAGAGATGCTCACCTCTGACGA
TATTAACAAGTTCGACGAGTCTTCACAAGTGAAGGCTAGTCGAAAAGTTT
TCGCATTGAAGCATGTTCAGGCACACATCTCAATGACAACTTTGTATCGG
GAAGAGATTATTTGTTAACCTCATTGTGTCTGGACAATGCCTCAAGAAGT
GGTGCCTTGGCCAACATGACATTGGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020737XLOC_020737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035467-exon-sc0001315-1491911889:34481..34809TCONS_00035467-exon-sc0001315-1491911889:34481..34809Clytia hemisphaericaexon
TCONS_00035467-exon-sc0001315-1510915933:34481..34809TCONS_00035467-exon-sc0001315-1510915933:34481..34809Clytia hemisphaericaexon
TCONS_00035467-exon-sc0001315-1575043694:34481..34809TCONS_00035467-exon-sc0001315-1575043694:34481..34809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001315supercontigsc0001315:34481..34809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.886912	0	0	0	7.57499	5.98585	1.14027	5.33751	1.24564	1.85151	1.4976	0.787571	0.393238	0.408382	0.67149	0.360306	0.887735	1.36485	0	0.65772	0.285839	0.418267	0	0.616349	1.58706	5.38238	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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