TCONS_00035466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035466
Unique NameTCONS_00035466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035466 ID=TCONS_00035466|Name=TCONS_00035466|organism=Clytia hemisphaerica|type=transcript|length=874bp
CTGTGGATAGCGTCCAAGCCAGTGTGTGGGATCTAAATTACTGTGGATAG
CTTCCGAGCCAGTGTGTGAGTGTTTGAGAATGTGCGGATCGCATCCGAGC
ATATATCTGAGTACGAATTTACTGTGGGTATCGTCCAAGCCAGTGTATGA
GTGTTTGAGTATGTGCGGATCGCATCCGAGCATTTATCTGAGGTATGAAT
TTACTGTGGATAGCGTCCGAGCCAGTGTAGAAATATCTTATAAAACAGTT
GGTAGCGACCAAGCCAGTGTAGAATTGACTGAAAGAGCTGTGGATAGCGT
CCAAGCCAACGTGAATGGTTACGGCAATAAAGTTTGTTAAAATGGGCAGA
TTCAGAATTGAAGCCACCGATTAGTAAGTACCCAGCACATCCCAAATGGT
TGGTCCTTGGGCTAAAAAACCTGGCACCAGGAAAAACTCTAGGACCGAAA
GACCGCAGGGTTGCAAGCATGCGTTGACATCATCTGGTGGTGTTTcctaa
aaatagaaaagaaaagtaaaagcAAACAACGAGGATAAGAAAAAAGCAAC
TGTTGGGTGGGTGGGAGGTAAATTCATTCTCAATCTGATCAGGCAGTAGA
AAAGGTAGGAAATAGGAGTGAGATCAATTTAAGGAGATCTAGCAGGCGGG
ACTAGCTTTAGATAAATTGCCGGCAGCCAATACCGAAATAGATAAAATGG
CAGCAAAGAGCCGACAGCAGAGATATCCTGTAGAAGCGGGATGAGCAACC
CCTGAAAGGCCTAGTGCGGGAGATGCGGGATCGATAATTAACCTAAGCTA
ATAAATTAGCTCCAATTTATaacctttttacttttttcttcttttacagt
aatataaaaaaaattataaaaaat
Run BLAST on NCBI

transcript from alignment at sc0001315:22179..23052

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035466 ID=TCONS_00035466|Name=TCONS_00035466|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0001315:22179..23052 (Clytia hemisphaerica)
attttttataattttttttatattactgtaaaagaagaaaaaagtaaaaa
ggttATAAATTGGAGCTAATTTATTAGCTTAGGTTAATTATCGATCCCGC
ATCTCCCGCACTAGGCCTTTCAGGGGTTGCTCATCCCGCTTCTACAGGAT
ATCTCTGCTGTCGGCTCTTTGCTGCCATTTTATCTATTTCGGTATTGGCT
GCCGGCAATTTATCTAAAGCTAGTCCCGCCTGCTAGATCTCCTTAAATTG
ATCTCACTCCTATTTCCTACCTTTTCTACTGCCTGATCAGATTGAGAATG
AATTTACCTCCCACCCACCCAACAGTTGCTTTTTTCTTATCCTCGTTGTT
TgcttttacttttcttttctatttttaggAAACACCACCAGATGATGTCA
ACGCATGCTTGCAACCCTGCGGTCTTTCGGTCCTAGAGTTTTTCCTGGTG
CCAGGTTTTTTAGCCCAAGGACCAACCATTTGGGATGTGCTGGGTACTTA
CTAATCGGTGGCTTCAATTCTGAATCTGCCCATTTTAACAAACTTTATTG
CCGTAACCATTCACGTTGGCTTGGACGCTATCCACAGCTCTTTCAGTCAA
TTCTACACTGGCTTGGTCGCTACCAACTGTTTTATAAGATATTTCTACAC
TGGCTCGGACGCTATCCACAGTAAATTCATACCTCAGATAAATGCTCGGA
TGCGATCCGCACATACTCAAACACTCATACACTGGCTTGGACGATACCCA
CAGTAAATTCGTACTCAGATATATGCTCGGATGCGATCCGCACATTCTCA
AACACTCACACACTGGCTCGGAAGCTATCCACAGTAATTTAGATCCCACA
CACTGGCTTGGACGCTATCCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020736XLOC_020736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035466-exon-sc0001315-1491911889:22179..23052TCONS_00035466-exon-sc0001315-1491911889:22179..23052Clytia hemisphaericaexon
TCONS_00035466-exon-sc0001315-1510915933:22179..23052TCONS_00035466-exon-sc0001315-1510915933:22179..23052Clytia hemisphaericaexon
TCONS_00035466-exon-sc0001315-1575043694:22179..23052TCONS_00035466-exon-sc0001315-1575043694:22179..23052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001315supercontigsc0001315:22179..23052 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284167	0.406305	0.244385	0	2.31695	2.0114	1.66492	2.78048	1.28645	1.50652	2.07106	1.45539	2.02161	1.77734	0.0812693	0.218909	0.254113	0.205248	0.0186505	0.106681	0.0582869	0.409098	0.12234	0.144913	0.850011	1.87543	0.152489	0	0.0875578	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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