TCONS_00035462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035462
Unique NameTCONS_00035462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035462 ID=TCONS_00035462|Name=TCONS_00035462|organism=Clytia hemisphaerica|type=transcript|length=923bp
GCCAGAatctcaatgttttgatttttaattgaaatgttttttctcTCGTC
TGTCTTTGGTGATTTAATTAGATGATCTGCAATGAAGTCTAAGATTAAAC
AGTCAGCCAACTATACATATGAATTGAATCGACGGGAATGCCACGGAAGC
AATTGCACCACAAGAATTTCTGTTACGACATTGACGCTGACGCTGACAAA
AATCAGGATGACAAATCCACTCTCCTTGTCTGCTATCTGGCACTCCCTTC
TTTAGAGTGTCAGTATGTGCCGtaaagtctgcgaccgcagtcggaggcga
ccagaaggctcctctttcgatagctatctaaccgaaggtaggggagggta
tGTGCCGTAGCTAACATACCATTCGAACACTAGATAAGTTTATTGTAGTA
GCAATTAGATGACGGATGTTTCGTTCCAATAATTTTGTTGAGTTTTATTC
AAACGTACATTTCAAATGAACATTTGTTgttaaatctttcaaaatgtcaC
GTGTAAAACATATGTAAAAACCATCTATACATGTACAAAGTTTTTCAATC
TCGACAATCTTGACCCCAAGTATTTAACACAGGCACAATCACTTCTTCAC
CAAGATTTGATCACTTAATTTACTCAAAtgctttacaaaaattttctcat
tctctAAACGTTGTTCCAAGCGGTCCGCAATTTCAATCATTTGTGCCGTC
TCTTCAATATGTAGTTGCTCATCCATATAGCGACTTTCATTATCCAAATG
TTCACGGTAAGCGGTCAAAATAATGGCCGCTAATAGTACGAGGATTAAAA
CGATGCATAACACTAAACGCCAGGGTATTTGGCACGGCTTATTCCAAATA
ACTTTATGCATGTTTTTCCATTTCCTTGCCAGCGAACGAGAGCGAGTTCG
AGAAAGAAATGACATAACGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00035462-protein

>TCONS_00035462-protein ID=TCONS_00035462-protein|Name=TCONS_00035462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
NVMSFLSRTRSRSLARKWKNMHKVIWNKPCQIPWRLVLCIVLILVLLAAI
ILTAYREHLDNESRYMDEQLHIEETAQMIEIADRLEQRLENEKIFVKHLS
KLSDQILVKK
Run BLAST on NCBI

transcript from alignment at sc0001314:11081..12003

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035462 ID=TCONS_00035462|Name=TCONS_00035462|organism=Clytia hemisphaerica|type=transcript|length=923bp|location=Sequence derived from alignment at sc0001314:11081..12003 (Clytia hemisphaerica)
AGAACGTTATGTCATTTCTTTCTCGAACTCGCTCTCGTTCGCTGGCAAGG
AAATGGAAAAACATGCATAAAGTTATTTGGAATAAGCCGTGCCAAATACC
CTGGCGTTTAGTGTTATGCATCGTTTTAATCCTCGTACTATTAGCGGCCA
TTATTTTGACCGCTTACCGTGAACATTTGGATAATGAAAGTCGCTATATG
GATGAGCAACTACATATTGAAGAGACGGCACAAATGATTGAAATTGCGGA
CCGCTTGGAACAACGTTTagagaatgagaaaatttttgtaaagcaTTTGA
GTAAATTAAGTGATCAAATCTTGGTGAAGAAGTGATTGTGCCTGTGTTAA
ATACTTGGGGTCAAGATTGTCGAGATTGAAAAACTTTGTACATGTATAGA
TGGTTTTTACATATGTTTTACACGtgacattttgaaagatttaacAACAA
ATGTTCATTTGAAATGTACGTTTGAATAAAACTCAACAAAATTATTGGAA
CGAAACATCCGTCATCTAATTGCTACTACAATAAACTTATCTAGTGTTCG
AATGGTATGTTAGCTACGGCACataccctcccctaccttcggttagatag
ctatcgaaagaggagccttctggtcgcctccgactgcggtcgcagacttt
aCGGCACATACTGACACTCTAAAGAAGGGAGTGCCAGATAGCAGACAAGG
AGAGTGGATTTGTCATCCTGATTTTTGTCAGCGTCAGCGTCAATGTCGTA
ACAGAAATTCTTGTGGTGCAATTGCTTCCGTGGCATTCCCGTCGATTCAA
TTCATATGTATAGTTGGCTGACTGTTTAATCTTAGACTTCATTGCAGATC
ATCTAATTAAATCACCAAAGACAGACGAgagaaaaaacatttcaattaaa
aatcaaaacattgagatTCTGGC

Coding sequence (CDS) from alignment at sc0001314:11081..12003

>TCONS_00035462 ID=TCONS_00035462|Name=TCONS_00035462|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001314:11081..12003 (Clytia hemisphaerica)
AACGTTATGTCATTTCTTTCTCGAACTCGCTCTCGTTCGCTGGCAAGGAA
ATGGAAAAACATGCATAAAGTTATTTGGAATAAGCCGTGCCAAATACCCT
GGCGTTTAGTGTTATGCATCGTTTTAATCCTCGTACTATTAGCGGCCATT
ATTTTGACCGCTTACCGTGAACATTTGGATAATGAAAGTCGCTATATGGA
TGAGCAACTACATATTGAAGAGACGGCACAAATGATTGAAATTGCGGACC
GCTTGGAACAACGTTTagagaatgagaaaatttttgtaaagcaTTTGAGT
AAATTAAGTGATCAAATCTTGGTGAAGAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020732XLOC_020732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035462-proteinTCONS_00035462-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035462-exon-sc0001314-1491911889:11081..12003TCONS_00035462-exon-sc0001314-1491911889:11081..12003Clytia hemisphaericaexon
TCONS_00035462-exon-sc0001314-1510915933:11081..12003TCONS_00035462-exon-sc0001314-1510915933:11081..12003Clytia hemisphaericaexon
TCONS_00035462-exon-sc0001314-1575043694:11081..12003TCONS_00035462-exon-sc0001314-1575043694:11081..12003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001314supercontigsc0001314:11081..12003 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0496887	0.0969086	0	0.33025	0	0.0529506	0.0638827	0	0.0418717	0.10373	0.100683	0.0661848	2.64371	1.23548	1.49539	1.75618	1.00713	0.726417	1.37333	0.552725	0.624544	0.562395	0.683665	1.13951	0.906926	1.61882	0.613198	0.290854	0.110301	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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