TCONS_00035455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035455
Unique NameTCONS_00035455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035455 ID=TCONS_00035455|Name=TCONS_00035455|organism=Clytia hemisphaerica|type=transcript|length=2293bp
ATTCTCAAATGCGTCGGAGAGTATTTAATAGGAGTTAGACTACTGATTAT
AGTTGTTGAAAAATGAGTTTTGATACTTACGATAATTTAGAATGTCACCT
CATTGACGATACTGCAAACAATGAAGCAAGTAGTCCAATAAGACGTCGTA
AAACCAAGAAAGAGCTTCGAAATGAAGAAGTCAGCCAACACGTTCAAGAT
CTTATCGATACCACATCATTTCATGGCATATCATATATCTTCGATAAAAG
ACACCCCATACGTCGAGTCATTTGGTTTTTCATCACTACATCAGCTTTTA
TATACTCCATGTTGAAAGTCTACGAAAGTACCGTTGAACATTTTTCCTAT
CCATTTAGTACAGCACGCATGCGTCAATATGTGGATAGCATTGATTTCCC
AGCTGTTTCGTTCTGTAATGTCAATGACATGCGGATGAGTGTATTAAACG
GAACGAATGTGGATCAAGCTGTTTTATCCGGTGAAGCGTCCGGCGTTAAT
GGAACGGAGTACGTCCGACTAAAAAGACTTTCCGCACACGAAATCGATGA
AATGTTGATTGATTGTGAATTTGATGGTCAGAAATGTTCCACTAAAAACT
TTACGCAATTTTACGCTAAGCAGGGTGATCAATGCTATAGTTTCAATTCT
GGTAAACCTGGGCACCCACTACAAACGGTGTCGGGACCAGGTAAAAGACG
GAGCTTGATTTTAACACTTGATATACAACATTATGATTANGAGTACGTCC
GACTAAAAAGACTTTCCGCACACGAAATCGATGAAATGTTGATTGATTGT
GAATTTGATGGTCAGAAATGTTCCACTAAAAACTTTACGCAATTTTACGC
TAAGCAGGGTGATCAATGCTATAGTTTCAATTCTGGTAAACCTGGGCACC
CACTACAAACGGTGTCGGGACCAGGAAAAAGACGGAGCTTGATTTTAACA
CTTGATATACAACATTATGATTATTACCGCGGTGGTTTGAAAGGTGGAAT
ACATCTGATTTTACATGGCCAAGGAGAAACACCAGTCAGGATGAGAGGTG
AGATGATTTCACCAGGCTATTCAACTTACATCCAAGTTGAGAAGAAAAAG
ATTATCAATCTTAAACCACCATTCAAGACAAAGTGCGGTtctttgaaatt
gaaacatttttcacaaTACTCCAAAAGCACGTGCTGGTTAGAACAACTAA
CGAATTACGTCACTGAGAAATGTAATTGCAAGGATGCTTTCATGCCTGGA
GATTTTCGTGTGTGTTCTTTTGAAGAAAGCGCCTTATGCATGTGGATGAA
TTGGGAGCattttgacaacaagaaattatACAATTGTCCATTATCATGTG
AGATTGATTCGTACAGTGGAAAGACCATCTCTAGATCATTGTTTCCCACT
GAACAGTATGCCAAAGTGTTGAaagaaaagctgaaaaatgaaaaacattt
acaGAAAGTCGACATGGGCGATGCAACAAAATTTATGAGGGACAACTTAT
TGCGAGTGGTGATTTACTATGATAACATGTCGTACGAACTGTTGGAGCAA
GTCCCAAGTTACGATACATTAGAATGGCTTGGTGACGTTGGCGGACAAAT
TGGATTATTCATTGGTGCTGGAGCGATGtcatattttgaagtcattgATG
CTCTTGCGTTAGTTGTCTTTGCAAGGTTCTTCAAAAGATTTACTGATGAA
GATTTAGACGATTATGAAGCTTGATTGCTGTTGCATTTTTGTGTGGTTGA
AGCAGAGAAACACTTTGctttatctgatattctgatggcgtattggtggc
cgcccacgctaaagctctaaaagagCAAACCTATATATGGTTAAAATATG
CCTGACCTTCAGAACGCAAAGtgtgtcgtagcatatttccataTCTGATG
CCAGATAACACTTTGCTGTGCCACAAAGGTATCTGGTGTGCCAACTTCCT
TCCTGGAGAAGTTAATCAATAAATCATTTCCGTTATACTTGAATAACATT
CAAATTGAGAAAATTAACATTTTGAGGCTGACTTTTCTACCAAATTCATA
TCAAAAAGCGATTTCTCAATTCTTAAAGGCTACTACAACGGAATAACGCT
TTTATGATGCTGCAGACTTTTTTCCTGATGTGGTTAAGAGATATTGGACA
TACATGAATTTCCAGGATAACACCCCTTCCTAGCATTCGTAGGTAGATGA
TTAAACCCACAGGATTTTGAATATCCtgtaaatatttatatttgagTGTT
CAATGCCACTGTATAGGTACTGCCagttcccgggggggggggg
Run BLAST on NCBI

transcript from alignment at sc0001314:16434..21749+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035455 ID=TCONS_00035455|Name=TCONS_00035455|organism=Clytia hemisphaerica|type=transcript|length=5316bp|location=Sequence derived from alignment at sc0001314:16434..21749+ (Clytia hemisphaerica)
ATTCTCAAATGCGTCGGAGAGTATTTAATAGGAGTTAGACTACTGATTAT
AGTTGTTGAAAAATGAGTTTTGATACTTACGATAATTTAGAATGTCACCT
CATTGACGATACTGCAAACAGTAAGTATTAGTAAAATGGTGacttaaagg
cttggggacacgagaaattgtttttcgcgttggtgcaatgcaacatgctc
tatcccaccaatGCAAGAATAAAGCTCGTGTCctttggtttctttttttg
tttcaaggaACAAAAAGTGTGGGAAATTTTTGAATCAATTTTGCCCATTG
AGATTTCACTTTATTgtcagaaagaaaaatgggtTAGAGacaagcgtttc
aggttggtgggatggaccatgttgcattgcaccaacgcgaaaaaaaacgt
GTGTCTCCAAGCCTTTAATACTATTGTAGGGAACACATGTGCTAAGAATA
CACTCATAGATCCGTGTAACGATTTTTGACAAGAAGCTTAAACTTCGGTT
CAGAGTGAGGTGAACTTtacaaagattttaaaaacatgtCGACGTTTAAA
AAGCCTGCAGTAAATTTACTTTTACTAGACTTCTAGTTAAGGCCTTTAAT
ATTTTGTCGAAATTTTGTCGAAGTTATAACTCGGATGTCTCCTGAGATTG
AACAAATTTTCTAATCCCTTTAGTTAACATTACTCTataaacccagctgg
cacacaacgttgtttcaacgtttatctaacgttcacaatgtccatttaac
gttagattaacgcgttgaaacaacgttgtgtgccagctggaaagCTTACC
CCATATCTCTAAATTTCATTATTTCGGACAAATTTGTTTTCCCCAAGCGT
ATTTGAGTTATGGAAACTTCACTGTATTTATTTGCATCTTTCACTTTAGA
TGAAGCAAGTAGTCCAATAAGACGTCGTAAAACCAAGAAAGAGCTTCGAA
ATGAAGAAGTCAGCCAACACGTTCAAGATCTTATCGATACCACATCATTT
CATGGCATATCATATATCTTCGATAAAAGACACCCCATACGTCGAGTCAT
TTGGTTTTTCATCACTACATCAGCTTTTATATACTCCATGTTGAAAGTCT
ACGAAAGTACCGTTGAACATTTTTCCTATCCATTTAGTACAGCACGCATG
CGTCAATATGTGGATAGCATTGATTTCCCAGCTGTTTCGTTCTGTAATGT
CAATGACATGCGGATGAGTGTATTAAACGGAACGAATGTGGATCAAGCTG
TTTTATCCGGTGAAGCGTCCGGCGTTAATGGAACGGAGTACGTCCGACTA
AAAAGACTTTCCGCACACGAAATCGATGAAATGTTGATTGATTGTGAATT
TGATGGTCAGAAATGTTCCACTAAAAACTTTACGCAATTTTACGCTAAGC
AGGGTGATCAATGCTATAGTTTCAATTCTGGTAAACCTGGGCACCCACTA
CAAACGGTGTCGGGACCAGGTAAAAGACGGAGCTTGATTTTAACACTTGA
TATACAACATTATGATTANGAGTACGTCCGACTAAAAAGACTTTCCGCAC
ACGAAATCGATGAAATGTTGATTGATTGTGAATTTGATGGTCAGAAATGT
TCCACTAAAAACTTTACGCAATTTTACGCTAAGCAGGGTGATCAATGCTA
TAGTTTCAATTCTGGTAAACCTGGGCACCCACTACAAACGGTGTCGGGAC
CAGGAAAAAGACGGAGCTTGATTTTAACACTTGATATACAACATTATGAT
TATTACCGCGGTGGTTTGAAAGGTGGAATACATCTGATTTTACATGGCCA
AGGAGAAACACCAGTCAGGATGAGAGGTGAGATGATTTCACCAGGCTATT
CAACTTACATCCAAGTTGAGAAGAAAAAGGTAAGGAATTTGTTCAATACT
GctttacatttttataagaataaactataagTACATAGGCTTCGacggcc
aaaaaattaagaacaagttcagaacattttaatgcttAAATGTTTCATTT
CTTAGATATGATCAAATAGAATAAAGCTCTTAACATGGGCACAAAAAGGG
CTAACAATAAAGCTTCACTTTATACtttatcgaaaaaattttccttcGTA
GCCCTCCTTTTAATTACCCTATTTGCACACTTggtatacagttgacgctc
gtTTCATCAACtttctactatttgatacgctctattattcgattatgttg
aaagtcaccgtcaacaagaaactcttataaagGACGCTCTATTACTACGC
ttccttacacgttttttttataagaacaaactatataagaagaatgacca
aaatattgagaacaagttaaagaacattttaaggctttgtggactccaaa
acacctaatttctcaggaaaacggacaaaaatgctcagaaaatggcgaaa
ataagaaaatgttaagaacatttttaggcttcatactcaaaaagtttaga
acatccgaaggcttcaaaaattttggatgttcttataaaaataacgtgta
ttcaatgaaaatccaatgcccttgaagatcgaattagagagtgtcaattt
tatttaaatctaGATTtccgaatttgaaatttccacccttttAATCTCAT
AATTTCAGATTATCAATCTTAAACCACCATTCAAGACAAAGTGCGGTtct
ttgaaattgaaacatttttcacaaTACTCCAAAAGCACGTGCTGGTTAGA
ACAACTAACGAATTACGTCACTGAGAAATGTAATTGCAAGGATGCTTTCA
TGCCTGGAGATTTTCGTGTGTGTTCTTTTGAAGAAAGCGCCTTATGCATG
TGGATGAATTGGGGTAAGCAAACTGAACTCTAAAGAAACCTCGAATGAAC
GTGCATATTTAAAGCGAATAGAATTAAAGTTCATTAGGCCGTGCAAGCTC
GAGATATTTCAACAATATGGTCAGACTCTCCATCAATCTCCTTAGACAAT
TTTTAGGCTAGGGGAGTGTTTTGGTTTGAAAGATGTTTTGGGACACGCAA
TTATTTTATTCTACCGTTCATTTAACATTACATGGGCTGTAAAAATGGAT
TCATTTTAGTTATGTGTCAACCTCGTTTCTGTGTATTCCCGGCTTTATTT
AGGTTACCTTTGAACACCATAGAATATTATCCAGTGCTATCAGTAAGgat
aaaaaagctgaaaatacaGGGAACGAGATCAGTTCTGTGCAAGTTTGGCT
TTTCATCTCATTTTATCCATTTTTCTCATTCAAACAGAGCattttgacaa
caagaaattatACAATTGTCCATTATCATGTGAGATTGATTCGTACAGTG
GAAAGACCATCTCTAGATCATTGTTTCCCACTGAACAGTATGCCAAAGTG
TTGAaagaaaagctgaaaaatgaaaaacatttacaGAAAGTCGACATGGG
CGATGCAACAAAATTTATGAGGTATTAGATACATATTAGATAACTTTACT
ATATCCAAGATACTCTCTTTGATACCATCCATGTATATCATTGCTTTGTG
TAcaaaaatatcctcctatatctaaagaactaaaacaaaatttcgACTTC
TGACCTTTAAGCTCTGCTCTTTATTTCACCCTTTTTCGTCGATAGCAGGA
GGCCTTAAAACTTAACATCATAGTGGCAAGGCCTTCAAACCCTTCAAAAG
ATCGAATAAAAACACTTAGTAAACATTGTGACAATGCAAACTATTTCAAT
TCAGTGATCACTTCCACCCACTCATTAGTCGCCACATACCTTGAACGTTA
GAAAACCAACTACTAAGTAGGGACAACGAGGCAAGCGGAAGTTGCCCTTA
AGGGTGTCGTTTTGGAACTTCAAAATCTCAAAGAAACGTAAAGATTACCT
TGAAGTTATCTTTATAACCCTGAAAAGCCTAtttctaagaaaaaaataag
ggtcacaaaatttacaaaaattcggGATTTTCCTCAATTTTAAAAAGCCT
GTTTTAGTCCGAAGGCATAAACCTGTCATTCTGCAATATCATTCTCCTGG
CATAAGTTTTATATCGGTGCAATTCTTGATTTGTTATTTTTAGGGACAAC
TTATTGCGAGTGGTGATTTACTATGATAACATGTCGTACGAACTGTTGGA
GCAAGTCCCAAGTTACGATACATTAGAATGGCTTGGTAAGATTGTACTta
ctaaaagctcaaaaatgttccaataaggctgagaatatagccttccagcc
acttaacccctcacaaatcaaaaattcaatgaAAGCGAAAGCACTAAAAT
CACGATTCTTACCCGAACTTTTAGATTTTGAAGAACGTCAAAATACCTAA
AATtgtcaataatatttttatgttgattgtagacgactaattcagacata
gtaaaAAATCATATTATTTAGCAATatgaattttacattttaaactTTTA
CTTTGAGTTCTAAAGGTACCATTCCTTGGAAAAGACTTGCCActataggc
ttctgctcatcctctacgAAAAACGTttctatataggaagtatatctata
gaggtctgcgattcagacaaATTTGCCACCGATACTGATCaccagagaca
ggggtgtattaacaAAATCCTTTTGATAACAGACTTTAAATTTTCTAACC
AAAGGTGACGTTGGCGGACAAATTGGATTATTCATTGGTGCTGGAGCGAT
GtcatattttgaagtcattgATGCTCTTGCGTTAGTTGTCTTTGCAAGGT
TCTTCAAAAGATTTACTGATGAAGATTTAGACGATTATGAAGCTTGATTG
CTGTTGCATTTTTGTGTGGTTGAAGCAGAGAAACACTTTGctttatctga
tattctgatggcgtattggtggccgcccacgctaaagctctaaaagagCA
AACCTATATATGGTTAAAATATGCCTGACCTTCAGAACGCAAAGtgtgtc
gtagcatatttccataTCTGATGCCAGATAACACTTTGCTGTGCCACAAA
GGTATCTGGTGTGCCAACTTCCTTCCTGGAGAAGTTAATCAATAAATCAT
TTCCGTTATACTTGAATAACATTCAAATTGAGAAAATTAACATTTTGAGG
CTGACTTTTCTACCAAATTCATATCAAAAAGCGATTTCTCAATTCTTAAA
GGCTACTACAACGGAATAACGCTTTTATGATGCTGCAGACTTTTTTCCTG
ATGTGGTTAAGAGATATTGGACATACATGAATTTCCAGGATAACACCCCT
TCCTAGCATTCGTAGGTAGATGATTAAACCCACAGGATTTTGAATATCCt
gtaaatatttatatttgagTGTTCAATGCCACTGTATAGGTACTGCCagt
tcccgggggggggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020726XLOC_020726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035455-exon-sc0001314-1491911889:16434..16553TCONS_00035455-exon-sc0001314-1491911889:16434..16553Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1510915933:16434..16553TCONS_00035455-exon-sc0001314-1510915933:16434..16553Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1575043694:16434..16553TCONS_00035455-exon-sc0001314-1575043694:16434..16553Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1491911889:17333..18312TCONS_00035455-exon-sc0001314-1491911889:17333..18312Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1510915933:17333..18312TCONS_00035455-exon-sc0001314-1510915933:17333..18312Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1575043694:17333..18312TCONS_00035455-exon-sc0001314-1575043694:17333..18312Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1491911889:19042..19246TCONS_00035455-exon-sc0001314-1491911889:19042..19246Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1510915933:19042..19246TCONS_00035455-exon-sc0001314-1510915933:19042..19246Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1575043694:19042..19246TCONS_00035455-exon-sc0001314-1575043694:19042..19246Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1491911889:19671..19854TCONS_00035455-exon-sc0001314-1491911889:19671..19854Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1510915933:19671..19854TCONS_00035455-exon-sc0001314-1510915933:19671..19854Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1575043694:19671..19854TCONS_00035455-exon-sc0001314-1575043694:19671..19854Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1491911889:20477..20568TCONS_00035455-exon-sc0001314-1491911889:20477..20568Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1510915933:20477..20568TCONS_00035455-exon-sc0001314-1510915933:20477..20568Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1575043694:20477..20568TCONS_00035455-exon-sc0001314-1575043694:20477..20568Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1491911889:21038..21749TCONS_00035455-exon-sc0001314-1491911889:21038..21749Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1510915933:21038..21749TCONS_00035455-exon-sc0001314-1510915933:21038..21749Clytia hemisphaericaexon
TCONS_00035455-exon-sc0001314-1575043694:21038..21749TCONS_00035455-exon-sc0001314-1575043694:21038..21749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001314supercontigsc0001314:16434..21749 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0192753	0	0.0459153	0.0362829	0.175095	0.122941	0	0	0.310454	0	1.1927	2.31126	0.0580003	0.0414955	0.591415	0.778505	2.82935	1.69538	2.16876e-08	0	0	0	0.28691	0	4.29389e-10	0.196736	0	0.0192512
Blast
[Close]
BLAST of TCONS_00035455 vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.296e-45
Identity = 134/500 (26.80%), Postives = 224/500 (44.80%), Query Frame = 3 
Query:  192 VQDLIDTTSFHGISYIFD-KRHPIRRVIWFFITTSAFIYSMLKVYESTVEHFSYPFSTARMRQYVDSIDFPAVSFCNVNDMRMSVLNGTNVDQAVLSGEASGVNGTEYVRLKRLSAHEIDEMLIDCEFDGQKCSTKNFTQFYAKQGDQCYSFNSGKPGHPLQTVSGPGKRRSLILTLDIQHYDXEYVRLKRLSAHEIDEMLIDCEFDGQKCSTKNFTQFYAKQGDQCYSFNSGKPGHPLQTVSGPGKRRSLILTLDIQHYDYY-------RXXXXXXXXXXXXXXXETP-VRMRGEMISPGYSTYIQVEKKKIINLKPPF-KTKCGSLKLKHFSQYSKSTCWLEQLTNYVTEKCNCKDAFMPGDFRVCSFEESALC----MWMNWEHFDNKKLYNCPLSCEIDSYSGKTISRSLFPTEQYAKVLKEKLKNEKHLQKVDMGDATKFMRDNLLRVVIYYDNMSYELLEQVPSYDTLEWLGDVGGQIGLFIGAGAMSYFEVID 1649
            +Q   +T++ HGI +IF      IRRV+W      +    +++  E    +FSY   T        S+ FPAV+ CN+N  R S L   ++  A            E + L  ++    D  L D           NF  +  KQ                               L+  H             H++ +M++ C+F GQ+C  ++FT  + K G +CY FNSG+ G PL T    G    L + LDIQ  +Y            + G+ + +H Q E P ++  G  ++PG+ T++  +++++  L PP+ + +   + L  F  YS + C ++  T Y+ E CNC+   MPGD   C+ E+   C    + +  E   N  L  C   C +  Y+ K +S    P++  AK L++K    +           K++ +N+L + I+++ ++YE +EQ  +Y+    LGD+GGQ+GLFIGA  ++  E+ D
Sbjct:   17 IQIFANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHA-----------GELLALLDVNLQIPDPHLADPSVLEALRQKANFKHYKPKQ----------------------------FSMLEFLHR----------VGHDLKDMMLYCKFKGQECGHQDFTTVFTKYG-KCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFFPVYSITACRIDCETRYIVENCNCRMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCL--CRTPCNLTRYN-KELSMVKIPSKTSAKYLEKKFNKSE-----------KYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLFIGASILTILELFD 452
The following BLAST results are available for this feature:
BLAST of TCONS_00035455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC21.296e-4526.80Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC... [more]
back to top