TCONS_00035450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035450
Unique NameTCONS_00035450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035450 ID=TCONS_00035450|Name=TCONS_00035450|organism=Clytia hemisphaerica|type=transcript|length=667bp
CAAAATCACTCTACTTGTTCAATATGGTGGTCAGGACCAAAGAGGAGGGT
ATGAAACTTTTCTTCAGAAATTCCAACTCTACAAAACTAAACTAGACTCT
GAACTTGAGAAAAGGGAAGTTGATAAACACAAAATGATGCTTGACAGTAG
TTTAACGATCGAACTTAAGAAATTTGGGGGATACGACTCAACTTATGACA
TCTTCACCTTCAAagagaaatttgagaaattccatcttcGAAATACTCCT
AAACACTTGTTACCAGACttgttaaaaatgaattatcttgAACATACTGC
ATTGTTGTTAGTCAAGGATTCAAATGATATTGACGAGATATGGAAGAGGC
TTAAGAAATCATTTGGTGACCCACAAGTGATGCTTGACAAGAAGCTCCAA
CAATTCGACAAACTTAACCTCACGCTCAAATCCAAAAACCTTGAGAAGAC
AATCGAATCACATGGTGAACTCATCAGCCTCATCAAAGACACCATGAAAC
TCGCCAAACTACACAATGTTGAAGGAAGATTGTACTACAGCAACAGTCTC
TAGAAGTTATGCAAGGTGATCGGTGAACACAGACAAAATCGTTGGTTATC
AATCACTTGTGAAGAAGACCTGGAAGGAGAAGATCTCTGGGGAAAATTCA
CCAGTTTCCTGGAGAAG
Run BLAST on NCBI

protein sequence of TCONS_00035450-protein

>TCONS_00035450-protein ID=TCONS_00035450-protein|Name=TCONS_00035450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
KITLLVQYGGQDQRGGYETFLQKFQLYKTKLDSELEKREVDKHKMMLDSS
LTIELKKFGGYDSTYDIFTFKEKFEKFHLRNTPKHLLPDLLKMNYLEHTA
LLLVKDSNDIDEIWKRLKKSFGDPQVMLDKKLQQFDKLNLTLKSKNLEKT
IESHGELISLIKDTMKLAKLHNVEGRLYYSNSL
Run BLAST on NCBI

transcript from alignment at sc0001313:14533..15199

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035450 ID=TCONS_00035450|Name=TCONS_00035450|organism=Clytia hemisphaerica|type=transcript|length=667bp|location=Sequence derived from alignment at sc0001313:14533..15199 (Clytia hemisphaerica)
CTTCTCCAGGAAACTGGTGAATTTTCCCCAGAGATCTTCTCCTTCCAGGT
CTTCTTCACAAGTGATTGATAACCAACGATTTTGTCTGTGTTCACCGATC
ACCTTGCATAACTTCTAGAGACTGTTGCTGTAGTACAATCTTCCTTCAAC
ATTGTGTAGTTTGGCGAGTTTCATGGTGTCTTTGATGAGGCTGATGAGTT
CACCATGTGATTCGATTGTCTTCTCAAGGTTTTTGGATTTGAGCGTGAGG
TTAAGTTTGTCGAATTGTTGGAGCTTCTTGTCAAGCATCACTTGTGGGTC
ACCAAATGATTTCTTAAGCCTCTTCCATATCTCGTCAATATCATTTGAAT
CCTTGACTAACAACAATGCAGTATGTTcaagataattcatttttaacaaG
TCTGGTAACAAGTGTTTAGGAGTATTTCgaagatggaatttctcaaattt
ctctTTGAAGGTGAAGATGTCATAAGTTGAGTCGTATCCCCCAAATTTCT
TAAGTTCGATCGTTAAACTACTGTCAAGCATCATTTTGTGTTTATCAACT
TCCCTTTTCTCAAGTTCAGAGTCTAGTTTAGTTTTGTAGAGTTGGAATTT
CTGAAGAAAAGTTTCATACCCTCCTCTTTGGTCCTGACCACCATATTGAA
CAAGTAGAGTGATTTTG

Coding sequence (CDS) from alignment at sc0001313:14533..15199

>TCONS_00035450 ID=TCONS_00035450|Name=TCONS_00035450|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0001313:14533..15199 (Clytia hemisphaerica)
CTAGAGACTGTTGCTGTAGTACAATCTTCCTTCAACATTGTGTAGTTTGG
CGAGTTTCATGGTGTCTTTGATGAGGCTGATGAGTTCACCATGTGATTCG
ATTGTCTTCTCAAGGTTTTTGGATTTGAGCGTGAGGTTAAGTTTGTCGAA
TTGTTGGAGCTTCTTGTCAAGCATCACTTGTGGGTCACCAAATGATTTCT
TAAGCCTCTTCCATATCTCGTCAATATCATTTGAATCCTTGACTAACAAC
AATGCAGTATGTTcaagataattcatttttaacaaGTCTGGTAACAAGTG
TTTAGGAGTATTTCgaagatggaatttctcaaatttctctTTGAAGGTGA
AGATGTCATAAGTTGAGTCGTATCCCCCAAATTTCTTAAGTTCGATCGTT
AAACTACTGTCAAGCATCATTTTGTGTTTATCAACTTCCCTTTTCTCAAG
TTCAGAGTCTAGTTTAGTTTTGTAGAGTTGGAATTTCTGAAGAAAAGTTT
CATACCCTCCTCTTTGGTCCTGACCACCATATTGAACAAGTAGAGTGATT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020722XLOC_020722Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035450-proteinTCONS_00035450-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035450-exon-sc0001313-1491911889:14533..15199TCONS_00035450-exon-sc0001313-1491911889:14533..15199Clytia hemisphaericaexon
TCONS_00035450-exon-sc0001313-1510915933:14533..15199TCONS_00035450-exon-sc0001313-1510915933:14533..15199Clytia hemisphaericaexon
TCONS_00035450-exon-sc0001313-1575043694:14533..15199TCONS_00035450-exon-sc0001313-1575043694:14533..15199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001313supercontigsc0001313:14533..15199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89244	3.22357	0.922749	0.330753	1.11878	0.58018	0.974034	1.47258	0.175115	0.744632	0.156959	0.51975	0.534338	0.264445	0.0439857	0	0.164911	0.0596026	0.35274	0.0996056	0.212396	0.109593	0.256742	0.286093	1.5405	2.33334	0.195428	0.0642391	0.474995	0.312159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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