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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035447 ID=TCONS_00035447|Name=TCONS_00035447|organism=Clytia hemisphaerica|type=transcript|length=805bp
CTCACAAGAAGACACTGCGTTTCCAAAGTATCTGAAATCTTCGACCCAAC
TGGAAAGATGACTCCAATCACTGCTGGTCTCAAACTCGATCTGCATGAAC
TAGTCAATCACAAACTTCAATGGGATGACGTCCTTCCAGACTCACTTCGC
TCACTATGAACATCCCACTTCGACATGATCCAAGAAATCAAGGACATCAA
ATTTCACCGCATAATCATTCCTGAAGATGCACTCAATCTCGACATCTCAA
CCCTCGACTTCGGTGATGCAAGTCCATCACTAGCTTGTGCTGCCATCTAC
ACTCGTATTCAAAGGAGAAATGGTACGTATTCGTCACAACTTGTATTTGC
ACGATCAAAACTCGTTCCTCAACCATCAACACAACCTCGAGCAGAGATGT
TTGCAGCATTGATAAACGTACACACTGGTGAAGTTGTCAAGAGAGCATTC
CAACAACATCACAAGGGATGCTTGAAAATCACAGACAACACCATCGTGCT
TCATTGGATATCAAACACTGAGCTTCAACTCAAGCAGTGGGTTCGTGACA
GAGTAATCGAAGTCCATCGACTCACAAACATCGAAGACTGGCGATTCATC
GACTCCAATCAAATGATGGCTGACTAAGCAACAAGGAGAGGTGTCCAGTT
ATCAGAGGTCCAGCCAAACTCAGAATGGTTCGTCAGCCAAGACTGGATGC
ACCAAGATGAATCCAAGTTTCCTGTTAAAAAGATTGATCTTGCAGGGCCT
GTAAAGGCATACTGCAATCACCACAGACGATCAACAATCAAGCTTTGGTT
GACGG Run BLAST on NCBI protein sequence of TCONS_00035447-protein >TCONS_00035447-protein ID=TCONS_00035447-protein|Name=TCONS_00035447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MIQEIKDIKFHRIIIPEDALNLDISTLDFGDASPSLACAAIYTRIQRRNG
TYSSQLVFARSKLVPQPSTQPRAEMFAALINVHTGEVVKRAFQQHHKGCL
KITDNTIVLHWISNTELQLKQWVRDRVIEVHRLTNIEDWRFIDSNQMMAD Run BLAST on NCBI transcript from alignment at sc0001313:10407..12110- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035447 ID=TCONS_00035447|Name=TCONS_00035447|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at sc0001313:10407..12110- (Clytia hemisphaerica)
CTCACAAGAAGACACTGCGTTTCCAAAGTATCTGAAATCTTCGACCCAAC
TGGAAAGATGACTCCAATCACTGCTGGTCTCAAACTCGATCTGCATGAAC
TAGTCAATCACAAACTTCAATGGGATGACGTCCTTCCAGACTCACTTCGC
TCACTATGAACATCCCACTTCGACATGATCCAAGAAATCAAGGACATCAA
ATTTCACCGCATAATCATTCCTGAAGATGCACTCAATCTCGACATCTCAA
CCCTCGACTTCGGTGATGCAAGTCCATCACTAGCTTGTGCTGCCATCTAC
ACTCGTATTCAAAGGAGAAATGGTACGTATTCGTCACAACTTGTATTTGC
ACGATCAAAACTCGTTCCTCAACCATCAACACAACCTCGAGCAGAGATGT
TTGCAGCATTGATAAACGTACACACTGGTGAAGTTGTCAAGAGAGCATTC
CAACAACATCACAAGGGATGCTTGAAAATCACAGACAACACCATCGTGCT
TCATTGGATATCAAACACTGAGCTTCAACTCAAGCAGTGGGTTCGTGACA
GAGTAATCGAAGTCCATCGACTCACAAACATCGAAGACTGGCGATTCATC
GACTCCAATCAAATGATGGCTGACTAAGCAACAAGGAGAGGTGTCCAGTT
ATCAGAGGTCCAGCCAAACTCAGAATGGTTCGTCAGCCAAGACTGGATGC
ACCAAGATGAATCCAAGTTTCCTGTTAAAAAGGTAAGCGAAATTATTCTT
ACCTCTAAAGATCTTCAAGAGTTTCACAAAGAAACACAGGCATTAAAGTC
AATAGATTTAAAGGCACCTCTTGATGTTACATCCAACGTCAACTTTGTTG
TTCCATCGGAAGTAAAAGCAAGATACACTTTCTCGGATTATTTAATTGAT
CCAAAAAAATTTCGATTCAAAACTGTTGTTAGAGTTTTAGCAATAGTTAT
CAAGAGCATCAGAAAGATGAGATGGATGAGAAAAAGACGAGATCAGCCAC
AGCAAAGTTCGATCAATCAAGCAATGGTCCATCCAAAGACGACATCAAGC
AAGCGGAAGATTATTTCTTTCGCAAAGCAACGATGGAGGTCAAACATTTC
AACAAGCCATCTGTCTACAACAAAGTCAGCCAAGAAGTCAGTGGCATCCT
TTACTACTCATGACGGTTTCTACCAACAGAAGCCATCAACATCGTCACTC
CAATGGCATCATCAATGCACGACTTGCAATCAACAAGCTATTTCGTTCCA
CTCGTCGACAAACACTCGCCTTTAGCATACAGCATCATCAACGAGGTTCA
CTGTTATGACGAAACAGTGAAACACAGTGGTAACGAATCAATTCTACGTT
TTGTCCTTAAGAGAGCTTACGTTCTTGAAGGACGTGAAATTGTCAAACGT
ATCAAACGAAACTGTACTCGATGTCGGTACATCGAGAAGAAGACTGTGAG
CATTGAAATGGGCAAGCTCTCGTCTCCTCAATTAACAATTGCCCCTGCAT
TTTATTATTCTNNNNNNNNNNNNNNAAACTGTACTCGATGTCGGTACATC
GAGAAGAAGACTGTGAGCATTGAAATGGGCAAGCTCTCGTCTCCTCAATT
AACAATTGCCCCTGCATTTTATTATATTCAGATTGATCTTGCAGGGCCTG
TAAAGGCATACTGCAATCACCACAGACGATCAACAATCAAGCTTTGGTTG
ACGG Coding sequence (CDS) from alignment at sc0001313:10407..12110- >TCONS_00035447 ID=TCONS_00035447|Name=TCONS_00035447|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0001313:10407..12110- (Clytia hemisphaerica)
ATGATCCAAGAAATCAAGGACATCAAATTTCACCGCATAATCATTCCTGA
AGATGCACTCAATCTCGACATCTCAACCCTCGACTTCGGTGATGCAAGTC
CATCACTAGCTTGTGCTGCCATCTACACTCGTATTCAAAGGAGAAATGGT
ACGTATTCGTCACAACTTGTATTTGCACGATCAAAACTCGTTCCTCAACC
ATCAACACAACCTCGAGCAGAGATGTTTGCAGCATTGATAAACGTACACA
CTGGTGAAGTTGTCAAGAGAGCATTCCAACAACATCACAAGGGATGCTTG
AAAATCACAGACAACACCATCGTGCTTCATTGGATATCAAACACTGAGCT
TCAACTCAAGCAGTGGGTTCGTGACAGAGTAATCGAAGTCCATCGACTCA
CAAACATCGAAGACTGGCGATTCATCGACTCCAATCAAATGATGGCTGAC
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035447-exon-sc0001313-1575043694:11379..12110 | TCONS_00035447-exon-sc0001313-1575043694:11379..12110 | Clytia hemisphaerica | exon |
| TCONS_00035447-exon-sc0001313-1575043694:10407..10479 | TCONS_00035447-exon-sc0001313-1575043694:10407..10479 | Clytia hemisphaerica | exon |
| TCONS_00035447-exon-sc0001313-1510915933:11379..12110 | TCONS_00035447-exon-sc0001313-1510915933:11379..12110 | Clytia hemisphaerica | exon |
| TCONS_00035447-exon-sc0001313-1510915933:10407..10479 | TCONS_00035447-exon-sc0001313-1510915933:10407..10479 | Clytia hemisphaerica | exon |
| TCONS_00035447-exon-sc0001313-1491911889:11379..12110 | TCONS_00035447-exon-sc0001313-1491911889:11379..12110 | Clytia hemisphaerica | exon |
| TCONS_00035447-exon-sc0001313-1491911889:10407..10479 | TCONS_00035447-exon-sc0001313-1491911889:10407..10479 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001313 | supercontig | sc0001313:10407..12110 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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