TCONS_00035446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035446
Unique NameTCONS_00035446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035446 ID=TCONS_00035446|Name=TCONS_00035446|organism=Clytia hemisphaerica|type=transcript|length=1720bp
CTCACAAGAAGACACTGCGTTTCCAAAGTATCTGAAATCTTCGACCCAAC
TGGAAAGATGACTCCAATCACTGCTGGTCTCAAACTCGATCTGCATGAAC
TAGTCAATCACAAACTTCAATGGGATGACGTCCTTCCAGACTCACTTCGC
TCACTATGAACATCCCACTTCGACATGATCCAAGAAATCAAGGACATCAA
ATTTCACCGCATAATCATTCCTGAAGATGCACTCAATCTCGACATCTCAA
CCCTCGACTTCGGTGATGCAAGTCCATCACTAGCTTGTGCTGCCATCTAC
ACTCGTATTCAAAGGAGAAATGGTACGTATTCGTCACAACTTGTATTTGC
ACGATCAAAACTCGTTCCTCAACCATCAACACAACCTCGAGCAGAGATGT
TTGCAGCATTGATAAACGTACACACTGGTGAAGTTGTCAAGAGAGCATTC
CAACAACATCACAAGGGATGCTTGAAAATCACAGACAACACCATCGTGCT
TCATTGGATATCAAACACTGAGCTTCAACTCAAGCAGTGGGTTCGTGACA
GAGTAATCGAAGTCCATCGACTCACAAACATCGAAGACTGGCGATTCATC
GACTCCAATCAAATGATGGCTGACTAAGCAACAAGGAGAGGTGTCCAGTT
ATCAGAGGTCCAGCCAAACTCAGAATGGTTCGTCAGCCAAGACTGGATGC
ACCAAGATGAATCCAAGTTTCCTGTTAAAAAGGTAAGCGAAATTATTCTT
ACCTCTAAAGATCTTCAAGAGTTTCACAAAGAAACACAGGCATTAAAGTC
AATAGATTTAAAGGCACCTCTTGATGTTACATCCAACGTCAACTTTGTTG
TTCCATCGGAAGTAAAAGCAAGATACACTTTCTCGGATTATTTAATTGAt
ccaaaaaaatttcgattcAAAACTGTTGTTAGAGTTTTAGCAATAGTTAT
CAAGAGCATCAGAAAGATGAGATGGATGAGAAAAAGACGAGATCAGCCAC
AGCAAAGTTCGATCAATCAAGCAATGGTCCATCCAAAGACGACATCAAGC
AAGCGGAAGATTATTTCTTTCGCAAAGCAACGATGGAGGTCAAACATTTC
AACAAGCCATCTGTCTACAACAAAGTCAGCCAAGAAGTCAGTGGCATCCT
TTACTACTCATGACGGTTTCTACCAACAGAAGCCATCAACATCGTCACTC
CAATGGCATCATCAATGCACGACTTGCAATCAACAAGCTATTTCGTTCCA
CTCGTCGACAAACACTCGCCTTTAGCATACAGCATCATCAACGAGGTTCA
CTGTTATGACGAAACAGTGAAACACAGTGGTAACGAATCAATTCTACGTT
TTGTCCTTAAGAGAGCTTACGTTCTTGAAGGACGTGAAATTGTCAAACGT
ATCAAACGAAACTGTACTCGATGTCGGTACATCGAGAAGAAGACTGTGAG
CATTGAAATGGGCAAGCTCTCGTCTCCTCAATTAACAATTGCCCCTGCAT
TTTATTATTCTNNNNNNNNNNNNNNAAACTGTACTCGATGTCGGTACATC
GAGAAGAAGACTGTGAGCATTGAAATGGGCAAGCTCTCGTCTCCTCAATT
AACAATTGCCCCTGCATTTTATTATATTCAGATTGATCTTGCAGGGCCTG
TAAAGGCATACTGCAATCACCACAGACGATCAACAATCAAGCTTTGGTTG
ACGGTCTTCTGCTGCATGNN
Run BLAST on NCBI

transcript from alignment at sc0001313:10391..12110-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035446 ID=TCONS_00035446|Name=TCONS_00035446|organism=Clytia hemisphaerica|type=transcript|length=1720bp|location=Sequence derived from alignment at sc0001313:10391..12110- (Clytia hemisphaerica)
CTCACAAGAAGACACTGCGTTTCCAAAGTATCTGAAATCTTCGACCCAAC
TGGAAAGATGACTCCAATCACTGCTGGTCTCAAACTCGATCTGCATGAAC
TAGTCAATCACAAACTTCAATGGGATGACGTCCTTCCAGACTCACTTCGC
TCACTATGAACATCCCACTTCGACATGATCCAAGAAATCAAGGACATCAA
ATTTCACCGCATAATCATTCCTGAAGATGCACTCAATCTCGACATCTCAA
CCCTCGACTTCGGTGATGCAAGTCCATCACTAGCTTGTGCTGCCATCTAC
ACTCGTATTCAAAGGAGAAATGGTACGTATTCGTCACAACTTGTATTTGC
ACGATCAAAACTCGTTCCTCAACCATCAACACAACCTCGAGCAGAGATGT
TTGCAGCATTGATAAACGTACACACTGGTGAAGTTGTCAAGAGAGCATTC
CAACAACATCACAAGGGATGCTTGAAAATCACAGACAACACCATCGTGCT
TCATTGGATATCAAACACTGAGCTTCAACTCAAGCAGTGGGTTCGTGACA
GAGTAATCGAAGTCCATCGACTCACAAACATCGAAGACTGGCGATTCATC
GACTCCAATCAAATGATGGCTGACTAAGCAACAAGGAGAGGTGTCCAGTT
ATCAGAGGTCCAGCCAAACTCAGAATGGTTCGTCAGCCAAGACTGGATGC
ACCAAGATGAATCCAAGTTTCCTGTTAAAAAGGTAAGCGAAATTATTCTT
ACCTCTAAAGATCTTCAAGAGTTTCACAAAGAAACACAGGCATTAAAGTC
AATAGATTTAAAGGCACCTCTTGATGTTACATCCAACGTCAACTTTGTTG
TTCCATCGGAAGTAAAAGCAAGATACACTTTCTCGGATTATTTAATTGAT
CCAAAAAAATTTCGATTCAAAACTGTTGTTAGAGTTTTAGCAATAGTTAT
CAAGAGCATCAGAAAGATGAGATGGATGAGAAAAAGACGAGATCAGCCAC
AGCAAAGTTCGATCAATCAAGCAATGGTCCATCCAAAGACGACATCAAGC
AAGCGGAAGATTATTTCTTTCGCAAAGCAACGATGGAGGTCAAACATTTC
AACAAGCCATCTGTCTACAACAAAGTCAGCCAAGAAGTCAGTGGCATCCT
TTACTACTCATGACGGTTTCTACCAACAGAAGCCATCAACATCGTCACTC
CAATGGCATCATCAATGCACGACTTGCAATCAACAAGCTATTTCGTTCCA
CTCGTCGACAAACACTCGCCTTTAGCATACAGCATCATCAACGAGGTTCA
CTGTTATGACGAAACAGTGAAACACAGTGGTAACGAATCAATTCTACGTT
TTGTCCTTAAGAGAGCTTACGTTCTTGAAGGACGTGAAATTGTCAAACGT
ATCAAACGAAACTGTACTCGATGTCGGTACATCGAGAAGAAGACTGTGAG
CATTGAAATGGGCAAGCTCTCGTCTCCTCAATTAACAATTGCCCCTGCAT
TTTATTATTCTNNNNNNNNNNNNNNAAACTGTACTCGATGTCGGTACATC
GAGAAGAAGACTGTGAGCATTGAAATGGGCAAGCTCTCGTCTCCTCAATT
AACAATTGCCCCTGCATTTTATTATATTCAGATTGATCTTGCAGGGCCTG
TAAAGGCATACTGCAATCACCACAGACGATCAACAATCAAGCTTTGGTTG
ACGGTCTTCTGCTGCATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020719XLOC_020719Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035446-exon-sc0001313-1575043694:10391..12110TCONS_00035446-exon-sc0001313-1575043694:10391..12110Clytia hemisphaericaexon
TCONS_00035446-exon-sc0001313-1510915933:10391..12110TCONS_00035446-exon-sc0001313-1510915933:10391..12110Clytia hemisphaericaexon
TCONS_00035446-exon-sc0001313-1491911889:10391..12110TCONS_00035446-exon-sc0001313-1491911889:10391..12110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001313supercontigsc0001313:10391..12110 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.34089	2.16527	0.502852	0.62355	0.522882	0.464122	0.807261	0.489973	0.220292	1.05457	0.404396	0.811363	0.73354	0.843406	0.119755	0.18902	0.0873213	0.104818	1.30204	1.71931	0.0374884	0.0802459	0.538342	0.515733	1.14204	0.823416	0.0643905	0	0.0860711	0.15931
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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