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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035445 ID=TCONS_00035445|Name=TCONS_00035445|organism=Clytia hemisphaerica|type=transcript|length=2484bp
cacgaatcttcattgtatattttttacaacccttagaaatttatgaagag
GACtgttgatgagaaccacttatctatctagcgtagtgaaaaagcaccct
atGTAAAAACAATAGTTAAATTTGGAGAAAtgtgaatacacgttttttat
aagagcaaactacagggtgtccaaaaaaagtatcgatatgtttaagaaaa
ttaaaaggCTTTATGGAATTTATGAAACTCATACTAACTTAGGAAATCGT
ACATAAACACTCACAATACGGTaaaactaagaacattttaagaataaaCA
GGCAAAAacagaaagtcaaaaattttggatgttctaaaAAAACCTTGCAT
TTGAGGCTCGTCAGAAATTTCAGTCAAAGTTATTGGTTATTGGTACTTAC
GGGGTccattaaaaaaatgaaataaaatatatgagaatataaataaaaat
tgtttaGATAATTAAGAATAAAAATGTTAATTgttcattttgagaaaatc
aaattcacataGTCATGGTTTATTGATATCTTCAAAGAGTTCAATTAAAG
GAGTTATTGCACCTTCTTTTGGTAATTCCTCCCGACTCCGGTCTTCATTG
CCATCAATACCAAGGATATCAATGCTATTCCAATATACCGAATATTCCGA
ATACTCTACATTCTCGTGTGACTCTAATGAATTTGAACCGTTCTCGTTAG
CCTTGAGAGGTGCAAGAATCGTGTCATTTTCACCTTGCTGTTTTAGCTCA
ATTTGTTCATCGTTTTCCTCATCAAACAAGCTACGCGTTCGTTGTAATTC
TTGAGGCTCAAGGTCGTCTGTTCTTGCTACCTTTGTCCCGCTAGatcttt
tcttcttctcttGTGACTCTAATGAATTTGAACCATTCTCGTTAGCCTTG
AGAGGTGTAAGAATCGTGTCATTTTCACCTTGCCATTTTAGCTCAATTTG
TTCATCGTTTTCCTCATCAAGCAAGCTACGCGTTCGTTGTAATTCTTGAG
GCTCAAGGTCGTCAATTCGTTTTACCTTTGTCCCGCTagatcttttcttc
tttttcttttgtgacTCTTTTGATTCTACTGAATTCGAACAGTTCCCATT
ATTATTAGTAGGTGTAAGAATATCGCCATTTCCGTATTGCAGTTGTAACT
CAATGTCATCTTGTTCTTCGTTCTCCTCAAGCAATATCGGTATCTGTAAC
TGAGATTCCACATCATCTGGTCCGTTCGTCTTTCCCATACTAAATCTCTT
TACACATTTCTTACAATGTAGTTTCTCATATAGTTCAGTAGCAATGTACG
AGATAATGAGATACCATAAAGGCGAGAATAAATTCTCCAAAATATAACAA
GCTTCTAATGTATTTTTTATAAAGTCGATATTTGGAACGTCGTAAATATA
AACCACAGCTCGCATTCCGTTGATAAACAAATGGAACGACAAACAAATCC
ATGAAACTATATCTAATCGTTGTAAAATACACTGTGaatctgttttattt
tttttactgtaAGGGTTTATTCGATAGTGAAGAAATGTGAATACAACGAA
AACAGGTGTCATGAAGAGAGTACGATATAAAGGGTAGGGAGCGAAGACTG
CCAAAGCGGCGATAATTAAACGCTCCAATAGTCTCCAAGTCTCCCACCAA
AACAAATTCTCTCTATACGGTTCTTCCAATGATTCTTTCAAGCGTTCATA
GATAAGCTCCCTGTTCGTAGGTTCAAGTTTCGTCCAAGTTTTGCGGAAAC
TTGTAAAAATGCCTAGCACTGGAAAtgctaaaaacattaaaaatgccTTA
ATGGAAATATATCTTTGCCGAAACAAGTTATATACTTTTGTGACTGCAAA
CGGAAATGGTATAACCCAAAAGATCAGGAAAATGAGAATCGCTCCCTGCA
GAGAAGTGTAACATTCAATATCACCATCAATGAAGAGGAACGTGGTATTA
TTCTCAGTCTTGCAGTTAATCAGAGTCAACACTGACGTGCAAATGTTCTT
GTAACAAAAAGTCAAAGTGATGTAATATCCAACATAAAATCTACATGACA
CGCTCTCAATCGTTTTATTTGATGGTTTTAAGAATCTCAGGTATTTTACG
ATTAAATGTAACGCGAAAATGATCATCATTATAACGAGCGGGGTCAAAAA
TCCAATCAAAACTTCCTTTTCGACGCCAGTGAAATCATGAGAAGGACAAA
GCTTTTCAAGTTTCTTTGTTGTTTCTAACACGATTTCCACGTTGAAAAAT
CTGTCTACCAATGATGTATTATCTAAGGTGGCGACGGTGATTAACGCTTT
GATTTGGTAGAAAGAGTAGATGATATCGAAAACGGATGAAAACTGACAAT
TCTCTTTATCCTCCTCTgggtcttcttcttcttcgtttgTAAATAgtctg
aaaaaaacaacaaataattGTGAGGATGAGTAGATACAGATTATTTTACA
CTcgtagcccagtaatctagactttcaatacaca Run BLAST on NCBI transcript from alignment at sc0001313:56581..59262+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035445 ID=TCONS_00035445|Name=TCONS_00035445|organism=Clytia hemisphaerica|type=transcript|length=2682bp|location=Sequence derived from alignment at sc0001313:56581..59262+ (Clytia hemisphaerica)
cacgaatcttcattgtatattttttacaacccttagaaatttatgaagag
GACtgttgatgagaaccacttatctatctagcgtagtgaaaaagcaccct
atGTAAAAACAATAGTTAAATTTGGAGAAAtgtgaatacacgttttttat
aagagcaaactacagggtgtccaaaaaaagtatcgatatgtttaagaaaa
ttaaaaggCTTTATGGAATTTATGAAACTCATACTAACTTAGGAAATCGT
ACATAAACACTCACAATACGGTaaaactaagaacattttaagaataaaCA
GGCAAAAacagaaagtcaaaaattttggatgttctaaaAAAACCTTGCAT
TTGAGGCTCGTCAGAAATTTCAGTCAAAGTTATTGGTTATTGGTACTTAC
GGGGTccattaaaaaaatgaaataaaatatatgagaatataaataaaaat
tgtttaGATAATTAAGAATAAAAATGTTAATTgttcattttgagaaaatc
aaattcacataGTCATGGTTTATTGATATCTTCAAAGAGTTCAATTAAAG
GAGTTATTGCACCTTCTTTTGGTAATTCCTCCCGACTCCGGTCTTCATTG
CCATCAATACCAAGGATATCAATGCTATTCCAATATACCGAATATTCCGA
ATACTCTACATTCTCGTGTGACTCTAATGAATTTGAACCGTTCTCGTTAG
CCTTGAGAGGTGCAAGAATCGTGTCATTTTCACCTTGCTGTTTTAGCTCA
ATTTGTTCATCGTTTTCCTCATCAAACAAGCTACGCGTTCGTTGTAATTC
TTGAGGCTCAAGGTCGTCTGTTCTTGCTACCTTTGTCCCGCTAGatcttt
tcttcttctcttGTGACTCTAATGAATTTGAACCATTCTCGTTAGCCTTG
AGAGGTGTAAGAATCGTGTCATTTTCACCTTGCCATTTTAGCTCAATTTG
TTCATCGTTTTCCTCATCAAGCAAGCTACGCGTTCGTTGTAATTCTTGAG
GCTCAAGGTCGTCTGTTCTTGCTACCTTTGTCCCGCTagatcttttcttc
tttttcttttgtgacTCTTTTGAATTTGAACCGTTCTCGTTAGCTTTGAG
AGGTGTAAGAATTGTGTCATTTTCACCGTGCTGTTTTAGCTCAATTTGTT
CATCGTTTTCCTCATTAAGCAAGCTACGCGTTCGTTGTAATTCTTGAGGC
TCAAGGTCGTCAATTCGTTTTACCTTTGTCCCGCTagatcttttcttctt
tttcttttgtgacTCTTTTGATTCTACTGAATTCGAACAGTTCCCATTAT
TATTAGTAGGTGTAAGAATATCGCCATTTCCGTATTGCAGTTGTAACTCA
ATGTCATCTTGTTCTTCGTTCTCCTCAAGCAATATCGGTATCTGTAACTG
AGATTCCACATCATCTGGTCCGTTCGTCTTTCCCATACTAAATCTCTTTA
CACATTTCTTACAATGTAGTTTCTCATATAGTTCAGTAGCAATGTACGAG
ATAATGAGATACCATAAAGGCGAGAATAAATTCTCCAAAATATAACAAGC
TTCTAATGTATTTTTTATAAAGTCGATATTTGGAACGTCGTAAATATAAA
CCACAGCTCGCATTCCGTTGATAAACAAATGGAACGACAAACAAATCCAT
GAAACTATATCTAATCGTTGTAAAATACACTGTGaatctgttttattttt
tttactgtaAGGGTTTATTCGATAGTGAAGAAATGTGAATACAACGAAAA
CAGGTGTCATGAAGAGAGTACGATATAAAGGGTAGGGAGCGAAGACTGCC
AAAGCGGCGATAATTAAACGCTCCAATAGTCTCCAAGTCTCCCACCAAAA
CAAATTCTCTCTATACGGTTCTTCCAATGATTCTTTCAAGCGTTCATAGA
TAAGCTCCCTGTTCGTAGGTTCAAGTTTCGTCCAAGTTTTGCGGAAACTT
GTAAAAATGCCTAGCACTGGAAAtgctaaaaacattaaaaatgccTTAAT
GGAAATATATCTTTGCCGAAACAAGTTATATACTTTTGTGACTGCAAACG
GAAATGGTATAACCCAAAAGATCAGGAAAATGAGAATCGCTCCCTGCAGA
GAAGTGTAACATTCAATATCACCATCAATGAAGAGGAACGTGGTATTATT
CTCAGTCTTGCAGTTAATCAGAGTCAACACTGACGTGCAAATGTTCTTGT
AACAAAAAGTCAAAGTGATGTAATATCCAACATAAAATCTACATGACACG
CTCTCAATCGTTTTATTTGATGGTTTTAAGAATCTCAGGTATTTTACGAT
TAAATGTAACGCGAAAATGATCATCATTATAACGAGCGGGGTCAAAAATC
CAATCAAAACTTCCTTTTCGACGCCAGTGAAATCATGAGAAGGACAAAGC
TTTTCAAGTTTCTTTGTTGTTTCTAACACGATTTCCACGTTGAAAAATCT
GTCTACCAATGATGTATTATCTAAGGTGGCGACGGTGATTAACGCTTTGA
TTTGGTAGAAAGAGTAGATGATATCGAAAACGGATGAAAACTGACAATTC
TCTTTATCCTCCTCTgggtcttcttcttcttcgtttgTAAATAgtctgaa
aaaaacaacaaataattGTGAGGATGAGTAGATACAGATTATTTTACACT
cgtagcccagtaatctagactttcaatacaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035445-exon-sc0001313-1491911889:56581..57580 | TCONS_00035445-exon-sc0001313-1491911889:56581..57580 | Clytia hemisphaerica | exon |
| TCONS_00035445-exon-sc0001313-1510915933:56581..57580 | TCONS_00035445-exon-sc0001313-1510915933:56581..57580 | Clytia hemisphaerica | exon |
| TCONS_00035445-exon-sc0001313-1575043694:56581..57580 | TCONS_00035445-exon-sc0001313-1575043694:56581..57580 | Clytia hemisphaerica | exon |
| TCONS_00035445-exon-sc0001313-1491911889:57779..59262 | TCONS_00035445-exon-sc0001313-1491911889:57779..59262 | Clytia hemisphaerica | exon |
| TCONS_00035445-exon-sc0001313-1510915933:57779..59262 | TCONS_00035445-exon-sc0001313-1510915933:57779..59262 | Clytia hemisphaerica | exon |
| TCONS_00035445-exon-sc0001313-1575043694:57779..59262 | TCONS_00035445-exon-sc0001313-1575043694:57779..59262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001313 | supercontig | sc0001313:56581..59262 + |
Blast
The following BLAST results are available for this feature:
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