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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035438 ID=TCONS_00035438|Name=TCONS_00035438|organism=Clytia hemisphaerica|type=transcript|length=2094bpRun BLAST on NCBI protein sequence of TCONS_00035438-protein >TCONS_00035438-protein ID=TCONS_00035438-protein|Name=TCONS_00035438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp MAGDKMKCLMKEKEEPGYTLKEIDVPIPQEGELLVKCLKSSICGSDINLFRun BLAST on NCBI transcript from alignment at sc0001312:48207..61132- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035438 ID=TCONS_00035438|Name=TCONS_00035438|organism=Clytia hemisphaerica|type=transcript|length=12926bp|location=Sequence derived from alignment at sc0001312:48207..61132- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001312:48207..61132- >TCONS_00035438 ID=TCONS_00035438|Name=TCONS_00035438|organism=Clytia hemisphaerica|type=CDS|length=13845bp|location=Sequence derived from alignment at sc0001312:48207..61132- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035438 vs. Swiss-Prot (Human)
Match: DHSO (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4) HSP 1 Score: 103.219 bits (256), Expect = 1.314e-23 Identity = 92/352 (26.14%), Postives = 158/352 (44.89%), Query Frame = 1
Query: 274 LKEIDVPIPQEG--ELLVKCLKSSICGSDINLFVWNDIARNIATVPFIPGHEGVSEIVKVGAGCPEEYKVGLTVCCE------NHFYCGTCYQCLHNQQHICQNLSQYGHGKGTIHGGFSEYSIIPTRYAYILKRNLDPEIACLLEPFGVS----HQGVEKLQPKDETVLVQGCGPIGLYAVSLCKYFGAKKIIATDIVEERLQLAKQLGADVLINGLNEDLPKKVMEETNNDGVGC----LLEASGAQPLVNNCFQMLRKGGTVVLIGVPKKALYVENVNRDILFKSLTLHTVHGRKIFHTWEHCERILADGKIDISATISHRFGMSEWEQAFEALMSGKCCKIMI--DPQ 1275
L+ + PIP+ G E+L++ ICGSD++ + + I I P + GHE + KVG+ + K G V E N +C L C G + + Y L N+ E L+EP V +G L K VLV G GPIG+ + + K GA +++ TD+ RL AK++GAD+++ ++++ P+++ + +GC +E +GA+ + R GG +VL+G+ + V ++ I + + + V + +TW +LA +++ ++HRF + + +AFE G KIM+ DP
Sbjct: 20 LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV-KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD--------DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHK---VLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQ-ISKESPQEIARKVEGQ-LGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAI--REVDIKGVF--RYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPS 353 The following BLAST results are available for this feature:
BLAST of TCONS_00035438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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