|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035437 ID=TCONS_00035437|Name=TCONS_00035437|organism=Clytia hemisphaerica|type=transcript|length=2214bpRun BLAST on NCBI transcript from alignment at sc0001312:44782..60966- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035437 ID=TCONS_00035437|Name=TCONS_00035437|organism=Clytia hemisphaerica|type=transcript|length=16185bp|location=Sequence derived from alignment at sc0001312:44782..60966- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00035437 vs. Swiss-Prot (Human)
Match: DHSO (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4) HSP 1 Score: 103.605 bits (257), Expect = 1.288e-23 Identity = 92/352 (26.14%), Postives = 158/352 (44.89%), Query Frame = 3
Query: 108 LKEIDVPIPQEG--ELLVKCLKSSICGSDINLFVWNDIARNIATVPFIPGHEGVSEIVKVGAGCPEEYKVGLTVCCE------NHFYCGTCYQCLHNQQHICQNLSQYGHGKGTIHGGFSEYSIIPTRYAYILKRNLDPEIACLLEPFGVS----HQGVEKLQPKDETVLVQGCGPIGLYAVSLCKYFGAKKIIATDIVEERLQLAKQLGADVLINGLNEDLPKKVMEETNNDGVGC----LLEASGAQPLVNNCFQMLRKGGTVVLIGVPKKALYVENVNRDILFKSLTLHTVHGRKIFHTWEHCERILADGKIDISATISHRFGMSEWEQAFEALMSGKCCKIMI--DPQ 1109
L+ + PIP+ G E+L++ ICGSD++ + + I I P + GHE + KVG+ + K G V E N +C L C G + + Y L N+ E L+EP V +G L K VLV G GPIG+ + + K GA +++ TD+ RL AK++GAD+++ ++++ P+++ + +GC +E +GA+ + R GG +VL+G+ + V ++ I + + + V + +TW +LA +++ ++HRF + + +AFE G KIM+ DP
Sbjct: 20 LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV-KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPD--------DGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHK---VLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQ-ISKESPQEIARKVEGQ-LGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAI--REVDIKGVF--RYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPS 353 The following BLAST results are available for this feature:
BLAST of TCONS_00035437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.