TCONS_00035429 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035429
Unique NameTCONS_00035429
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035429 ID=TCONS_00035429|Name=TCONS_00035429|organism=Clytia hemisphaerica|type=transcript|length=1583bp
GATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTTTATGGAATACAA
ATCTTATACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAAT
CCAAAATTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTAT
GTGGGTGGTCTAACTTGGGTTTGCTATGGTCGAAGTGGGCAGTGAAGCAT
CACAGAAACTGTGTATGGAACGTTTAAGTGCTCACTTGATACATGGTCGA
AATCCTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTGAAAA
CCAAGCCAGAAAAGAAATCCCTGGATTAGCAGCAGCAGAAAAACGAGAAG
ACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTGCTCCAGTCGTGCCC
CAACAACAAGCACCGCCGCAAATCATTGCAGGACTTCCACCACCCGGTGC
CACTATCGTCAATGGCCCTCCTCCCTTTATGGACCCTAACTTCATTCAGC
AGCCTCAACCACCACAGTTCATCCCTCATGGTCAAATACCACAAGGAGCA
GTCATAGTCGATGCCGCTGGAAACTTCATACAAGGAGGTCTTCCTGGACA
ACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCCCGGCCTTCCCATGC
AAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTAATCCAGCGTTTATC
AACCAAGACCAAGCTCCTCCTATCGACCCTGTGACCGGCGTCCCTTTGCA
AACGGCTGGCTTAAATCAACAAGACATGGAATCGATGCGACGAAACCAAG
CAGTTGCTAGCACTGCAATCCAACGCGCAATGACTGATGCAAACGCCGGT
GAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCCATTTCTCTTATCAA
ACAATCTTCCACTGCTAACACTGAACCTGCGCAAGTTTTAGTTCAATCGC
TGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAGTTCAAAAAGGTTCG
GGTGGACGAGGTGGTGGTCGTTATCAAAACGATTATCGTGAGCACGAACG
TGGCGATAAAAGGAGACGCCGTGATAGATCACGTTCTCGAAGTCGTGAAC
GAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGCGATCGAGATCAAGA
GAAAGAAGACGACGCTAAATGGAATATATTGCAAACTAGAAACAGTTTTT
TAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAAAATGGTATTGACAT
TTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACGTTTATGATATGAAT
AATAGTCTGAGAATTTTAATGCGGTGTTTTtaagtattattttttttact
tatcAAAGGGACCATTGTAAACAAACGatgtatgtttttattgtaaagat
TAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCAACTTCTTGTcctct
taagggctctgaccatagtcaaaaaaattattttggtatttgaacataaa
agttatatttcaggttccttaacacttttaacaaagaattgcctttataa
attgctttttaatcgaatcccttaagagtaatt
Run BLAST on NCBI

transcript from alignment at sc0001312:13279..19725-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035429 ID=TCONS_00035429|Name=TCONS_00035429|organism=Clytia hemisphaerica|type=transcript|length=6447bp|location=Sequence derived from alignment at sc0001312:13279..19725- (Clytia hemisphaerica)
GATGGTGAACAACCAGTACCTGGGGTGCAGACTGTCTGTGAGTGATTTGA
AAATTATTTCATGTTCCTTTTTAATTCATTTTAAGGTTAATAATAATACT
GCCCGTGATCAGTTAAGCCTAAATCGGAGAATTTATGTCTGTTGGTCTGT
CTGAAAACGTTAAGCCAGCCTAGAGTTTTCAAAAATATTCAGTTCTTTTG
CATACTTTGAGGATTTCCAGGAATTTCCGGATGATGTGAAAGAGTTTAAA
ATACTAATTTAGTTCGTCCACCTCCACTTTATGCTTTATCTTTTTTGGCT
TGAAACCGGGATTGTCCACCCCCTGTATGAATTTTCTATAGAACCAGCCC
AATGTAAAGAGTTTAAACAACAGCCACAACTTAAAAATGTTGTCTAACCT
GAGGTTAAGCCTAGTGCTTATTTTTATTATGTATGATTATTGTGCTTAGA
CTAATATCTAAAATGCTTCATCTAACAAGAATATCATTGAATTATTATTT
TCTAGTTATGGAATACAAATCTTATACTACAACACACCCCAAATCAGTAG
AACAGCAAGAAAAGGAATCCAAAATTGCAGCAAATGTTGACTATCATCCA
AGAGGAAAGCAATTTTATGTGGGTGGTCTAACTTGGGTAGGTGATTCGTT
CACTGTGTCGGTGAAGTATGCTTTTTATTTATTTCAATAATGATTACAGG
ATAAATTATTAAAACACAGAAATAGTTCTTACTGTAAATAACTCTACCAG
TCCAAGGAACTTTAATAAAGATAAAGCATTGAATATTATTAACTGAAGCT
CCCTGACCGGTCCAGGTGTCAATGTGAATTTTACCATACAACCTTCAAGT
GAAATTAATCGATTATTTTTTATTTGAGCATAGAAAGGCATTTAATTTGT
AACTAATATTGGATCATATTTTATGTATAATAACTTCCTACTGAGATGTA
ATATAATTACACGTCATTATCTTTGTAAATTTGTTATAAACAACTGTTTG
TTAAACACTAGTGGACCACAGATGAGCAAGTAGGGAACGCCATCACCCAA
TGTGGAATTGCTGATTTGATAAGTGTCAAATTTTTTGAGAATCGCATCAA
TGGACAATCGAAAGGGTGAGTGATCCTCCGTTAATCATTTTCTCATTTGT
TTCTTTTATCACAACCTTTCTGTAGTGGTGCTTATAAATAATCGATTTTT
AACTTGATCTTCTTACATTTTGATAATTATGGAAATTTCGATGAGAATAA
AAGGCTTAATCAGTAAAAAATGTTTCCAATTTTGCANAATGCTTCATCTA
ACAAGAATATCATTGAATTATTATTTTCTAGTTATGGAATACAAATCTTA
TACTACAACACACCCCAAATCAGTAGAACAGCAAGAAAAGGAATCCAAAA
TTGCAGCAAATGTTGACTATCATCCAAGAGGAAAGCAATTTTATGTGGGT
GGTCTAACTTGGGTAGGTGATTCGTTCACTGTGTCGGTGAAGTATGCTTT
TTATTTATTTCAATAATGATTACAGGATAAATTAGCAAAACACAGAAATA
GTTCTTACTGTAAATAACTCTACCAGTCCAAGGAACTTTAATAAAGATAG
AGTATTGAATATTATTAACTGAAGCTCCCTGACCGGTCCAGGTGTCAATG
TGAATTTTACCATACAACCTTCAAGTGAAATTAATCGATTATTTTTTATT
TGAGCATAGAAAGGCATTTAATTTGTAACTAATATTGGATCATATTTTAT
GTATAATAACTTCCTACTGAGATGTTATATAATTACACGTCATTATCTTT
GTAAATTTGTTATAAACAACTGTTTGTTAAACACTAGTGGACCACAGATG
AGCAAGTAGGGAACGCCATCACCCAATGTGGAATTGCTGATTTGATAAGT
GTCAAATTTTTTGAGAATCGCATCAATGGACAATCGAAAGGGTGAGTGAT
CCTCCGTTAATCATTTTCTCATTTGTTTCTTTTATCACAACCTTTCTGTA
GTGGTGCTTATAAATAATCGATTTTTAACTTGATCTTCTTACATTTTGAT
AATTATGGAAATTTCGATGAGAATAAAAGGCTTAATCAGTAAAAAATGTT
TCCAATTTTGCAAACTCACTTGATTAATTTAGACCTGATTTGAAATATAC
CTCATATTTTCCTCCTGCTTACTCTTTGTTTTATTTTAATTTAATTGATC
TTCCCCATTTGATGCTTTAGATCATCTGCTGTGGGACCCAAAATGCAAGC
CATTGGCTGAATTTTTAACACTGTACATAAGAATTAGTTTTGTAAACAAA
TATCCTATAGAACAGTTACCTTCAAAAGGCCGGTAAATTTCTTAAGGAGC
ATTTCTTATTAAGCAAAATAAAAAGTTTTTTACGAGAAAAGACTATTGTT
CATCTAATTGATCCTTTTGAAGGTATTTGTTCGTGAACCTTTGGGCAGTT
TCTCAGTATTAAACGTTGTAAGAATTTTTGCTTGTAAGCACGACACTGTA
AATGCAGCTTTTATATTTTTAAATTGGGGGGGGGCAAGGTCATGTGAATC
AGGTTAACTTGTCTATCAAGTTTGTTGTGGATATCAATTGTTGCTGAATG
ATGTTGCATCTCTTATTCAGCTTGTTGAGTTTGGTGGAAGCAACGTTATT
TTTAACTTTATGAAATGATTCAGAAAAACAAAACCCTTTAACAGGATGGT
CAGCTCTGACTCCTGCTTGGGTGAAACTAATCAATGTCATCCATTTTCTT
TTCACTTCTCATCATCCTTTTAGCAAACTGATTTGAAAAATTGTACTTGT
TGTTCAGATTCACTTTAGTTTAGTAATGTCTCCGACTCTATTGGCTAAAA
TGTAGTGTGGTATTGCAAAAATACTCCATTTCCATTTGAATATAATTCTA
AAACTATTTATTTTTTTGTACAGGTTTGCTATGGTCGAAGTGGGCAGTGA
AGCATCACAGAAACTGTGTATGGAACGTTTAAGTGCTCAGTAAGTTCTTA
CTACTTGCATGCAAAAATAATGCAGAAAAAATATTTCTCATTGTCTATTG
AATATTTTAGAAGAACTTTAAAGAAGTTTGAAGGCGATCGGTAAAACAAT
ATAAATGCTTGTAACATCGTTTGAGAAAGAGTTTTGTTTATCTTTATTTG
GGAAACTTATTTTGCTGAGTGGAATGATTGGCACGCCATGGTAATGGATT
CATTTTTCATTTGTTCTCGTTTCTTTACAGCTTGATACATGGTCGAAATC
CTGTTGTTGATTATGTCAATAAGCAATCACTAACTATGTTTGAAAACCAA
GCCAGAAAAGGTATTCGTATAGTAACTTCCCCGAATCTTCGTTGCTAGGA
ACTAAAGGTTAATGGTGTAAAGTTTTGATAATTTGTCAGCATTTTTTGCT
AAAAGCATTAAAATTTCGAGCCTCGATCCTAATTTCATTTGCACGGTTCC
CACTTGCAGAAAGTCAAGTTGTCACAAAAAAATAGGTGCTGCGTGCTGGC
CTTTATGGTCAGATGTACCAAAACTGATCAAAACTAAGACTTTCGAGAAT
TTCGACGGTGAATTAAAATGTCGTCTGGAAAGTGAGCATCATTTTAAGAT
TACAGACGTCAGAAGACTCTGCTGTTTGTTGGCTATGAAAGAAAATTACC
ACAAATGACTGTTAGTGTATGTTACAATTAGTCTTTATCGTCCTCGTGTA
AACATAGGATCCACCCCCCCAGAGATTTGGGGGTACCTAAATAAAAGAAA
GTTTTAAAAAAGCCAGGTACCTGGAAGTATTCTTAAATTTAGGGGGTACC
TGATATGTTTGGGGGTACCTGCATTTTCATTAGTGGGGGCGGGGGCTGTT
GTTTTTGTATGAAACCTTGAATTCCTTGAAACCCTTGAAACACCCTTGAA
ATGCAAGATTTATACCCTTGAAACCCTTGAATTGCCAAATTTTGTGGCCA
TTTTCAGCCATTTTAACTTTCAGAAATACAAAAATTTTACTATTGCGTGG
GATACAAACATCGTAGTGACTTAAAAATGACTTTTGGAACCCCTGAGACT
CAAGGGGATATTCCACGCCCATTCTTATGGGGTTTACCTTTTAACTCATT
AAGTGCCACTGGAATTATATGAGATGGGCAGGTCTGGGTGATAGAATGGG
TGGTTGTAAAATTATCAATTATGAGCCAATTTAATGGCCATCCTTTACAC
AAAAATTGAGAATTCAACCTTTCTCCTTTTGTCGACAGATTTCCTTGAAA
TCTTTGAAAACTAGCAAAGATCAACTAAAAACCCTAGAAACCCTTCAAAG
TTTGTGGTATATAAGAATCTCTTGAAACCCTGGAAATTATAGTTAAAAAT
AATNAAGAATCCCTTGAAACCCTGGAAAATTATAGCAAAAAATAACACCC
TTGAATTTGTTAGAAAAAAAAGTGCTGGCCGCCATGGAAGTATTTTCCCA
GGAATGACAAAAGAGCAAAAAATCCCTTTTTGTATTTTTAACAATAAAAA
AATTAACTACTTACTTACTTAATGATTGGGGGTACCTGAACCCTGGGGGA
CCCTATTGTAAATTAGGCAGCTGAAACGCTGAAAAAACGATTTCCAATCA
TTCAACTTAAGATGCATATTCAATTTGTTACTAGACTTGTCAGAATGCTT
TTAAGTTTCTTGAAGAACAACAGATAAAAAGTGGTAGAATCCGTATATTT
TTTGTCAGAATTCTCTCTGTCAAGTCTCTGCCATTTTCAGGCGAGCAGTC
TTGCAGGTGGTTAAAGTCTGTCTCAATATAATCTGCAGCGGAGACAAAAA
AGCTATAACTTTCGATGTAATTCGAATAAGATACCGGTTTTGTACTCTTT
AAAAAGGTATTCCGGAGTGGAATATTATCACAGAAGAAAAATTCAAAATA
ATAGAAAAATAAAGATGAATAGTGAAGAAAAAGAAAATCAACCTCATGTA
GAAAGTGTTATCATCTTCATTCTTGAACTCTTCGTTCTTATAACGTCAGA
AATGCAAAAGAAAATTCAAAAAATATTTATTCAGTCAAAAAATACAGCTT
AAAACGTTTCCCTGGTGGACTTGAAAAGGGGCTCCTTTTTGTTGTTTTTT
GATGGTTTTCAAAGTCAATCAGATACCTACGTTTACTTGCTAAACCAATT
AAACTTGTTTACTCTATTCTCTCCACAGAAATCCCTGGATTAGCAGCAGC
AGAAAAACGAGAAGACGCTTTCAACAACTATTCGCGCAAACCGAAGCCTG
CTCCAGTCGTGCCCCAACAACAAGCACCGCCGCAAATCATTGCAGGACTT
CCACCACCCGGTGCCACTATCGTCAATGGCCCTCCTCCCTTTATGGACCC
TAACTTCATTCAGCAGCCTCAACCACCACAGTTCATCCCTCATGGTCAAA
TACCACAAGGAGCAGTCATAGTCGATGCCGCTGGAAACTTCATACAAGGA
GGTCTTCCTGGACAACTTCCCCCCGGTGTTGTTCCACAAGGTCTTCAGCC
CGGCCTTCCCATGCAAGCGCCTGTTCGTCCAGGAGTTGCTCCTCATATTA
ATCCAGCGTTTATCAACCAAGACCAAGCTCCTCCTATCGACCCTGTGACC
GGCGTCCCTTTGCAAACGGCTGGCTTAAATCAACAAGACATGGAATCGAT
GCGACGAAACCAAGCAGTTGCTAGCACTGCAATCCAACGCGCAATGACTG
ATGCAAACGCCGGTGAGTTCGAAAGTGGAATTGAAACTCTGGTGACGGCC
ATTTCTCTTATCAAACAATCTTCCACTGCTAACACTGAACCTGCGCAAGT
TTTAGTTCAATCGCTGCAAGATTGTTTGCAAGGTTTAGAAGGACAATTAG
TTCAAAAAGGTTCGGGTGGACGAGGTGGTGGTCGTTATCAAAACGATTAT
CGTGAGCACGAACGTGGCGATAAAAGGAGACGCCGTGATAGATCACGTTC
TCGAAGTCGTGAACGAGGTGGTGGCAACCGTCGCTCGTATTCACCACGGC
GATCGAGATCAAGAGAAAGAAGACGACGCTAAATGGAATATATTGCAAAC
TAGAAACAGTTTTTTAGAGAGAAGATTTTCACCCGTGCGTGATTTACGAA
AATGGTATTGACATTTCAAAACACCCTGAGTGTGTCAAAGAGAAGAAACG
TTTATGATATGAATAATAGTCTGAGAATTTTAATGCGGTGTTTTTAAGTA
TTATTTTTTTTACTTATCAAAGGGACCATTGTAAACAAACGATGTATGTT
TTTATTGTAAAGATTAGTTTCTATCCGGTAATTTCTTTATTCGTAAATCA
ACTTCTTGTCCTCTTAAGGGCTCTGACCATAGTCAAAAAAATTATTTTGG
TATTTGAACATAAAAGTTATATTTCAGGTTCCTTAACACTTTTAACAAAG
AATTGCCTTTATAAATTGCTTTTTAATCGAATCCCTTAAGAGTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020713XLOC_020713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035429-exon-sc0001312-1575043694:19689..19725TCONS_00035429-exon-sc0001312-1575043694:19689..19725Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1575043694:18264..18394TCONS_00035429-exon-sc0001312-1575043694:18264..18394Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1575043694:16737..16802TCONS_00035429-exon-sc0001312-1575043694:16737..16802Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1575043694:16416..16495TCONS_00035429-exon-sc0001312-1575043694:16416..16495Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1575043694:13279..14547TCONS_00035429-exon-sc0001312-1575043694:13279..14547Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1510915933:19689..19725TCONS_00035429-exon-sc0001312-1510915933:19689..19725Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1510915933:18264..18394TCONS_00035429-exon-sc0001312-1510915933:18264..18394Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1510915933:16737..16802TCONS_00035429-exon-sc0001312-1510915933:16737..16802Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1510915933:16416..16495TCONS_00035429-exon-sc0001312-1510915933:16416..16495Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1510915933:13279..14547TCONS_00035429-exon-sc0001312-1510915933:13279..14547Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1491911889:19689..19725TCONS_00035429-exon-sc0001312-1491911889:19689..19725Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1491911889:18264..18394TCONS_00035429-exon-sc0001312-1491911889:18264..18394Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1491911889:16737..16802TCONS_00035429-exon-sc0001312-1491911889:16737..16802Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1491911889:16416..16495TCONS_00035429-exon-sc0001312-1491911889:16416..16495Clytia hemisphaericaexon
TCONS_00035429-exon-sc0001312-1491911889:13279..14547TCONS_00035429-exon-sc0001312-1491911889:13279..14547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001312supercontigsc0001312:13279..19725 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.70173	6.96509	2.77864	4.04054	0.75751	0.672467	0	0.180803	1.12786	0.656019	2.40934	1.59319	0.769079	1.06243	1.05578	1.31419	1.60158	1.24234	0.771417	0.207008	0	1.58769	4.96852	4.33521	0.158244	0.338499	1.57339	1.99446	1.63677	3.25081
Blast
[Close]
BLAST of TCONS_00035429 vs. Swiss-Prot (Human)
Match: CPSF6 (Cleavage and polyadenylation specificity factor subunit 6 OS=Homo sapiens GN=CPSF6 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-17
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 2 
Query:  689 PAFINQDQAPPIDPVTGVPLQTAG--LNQQDMES-MRRNQAVASTAIQRAMTDANAGEFESGIETLVTAISLIKQSSTANTEPAQVLVQSLQDCLQGLEGQ 982
            P +   D  PP     G  + TA   L++ + E  M RN+A++S+AI RA++DA+AG++ S IETLVTAISLIKQS  +  +  +VL+ SLQDCL G+E +
Sbjct:  388 PPYDRGDYGPP-----GREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESK 483
The following BLAST results are available for this feature:
BLAST of TCONS_00035429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPSF63.020e-1746.53Cleavage and polyadenylation specificity factor su... [more]
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