TCONS_00035422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035422
Unique NameTCONS_00035422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035422 ID=TCONS_00035422|Name=TCONS_00035422|organism=Clytia hemisphaerica|type=transcript|length=469bp
ACTATGATGTGTTTTCAAAGTATCCGGATGAATTAGGTCATGAAACAATT
CATGAAGCATTGGCAGTTTTGAAATATGCACCGAGTTTGCTAAAGAATGA
CGAAACACTTTCGTGTCAAATTGTTAGCGATGCCCCAAAGTTGTGTGCCG
CGTCGAAATCGTATGTGATGGAAGTTCAAAGAGTTGAAATTGTCCCACCT
ACTTATGTGAATCGTGCGATTTGTAAAGTCGAAAAATTATGttgtgtttt
taaagaaaaacctaaaaatgttttgaaaatgtacTCTGAAAATGTTTTGA
CCCTATCATACGGAAAAGTTAACGAGTCAGCAGTGCAATTGGTTTCAAAA
AGTGGTTGTCTCGCGAAAGTTGTTCCAACACAGTGTTCTTTAGTGAGTAT
CTTCTGTATTTATGTTATACTTTTCCGTCTGCTTTGCAATAATTCTAcag
ttttctatttctattattG
Run BLAST on NCBI

protein sequence of TCONS_00035422-protein

>TCONS_00035422-protein ID=TCONS_00035422-protein|Name=TCONS_00035422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
YDVFSKYPDELGHETIHEALAVLKYAPSLLKNDETLSCQIVSDAPKLCAA
SKSYVMEVQRVEIVPPTYVNRAICKVEKLCCVFKEKPKNVLKMYSENVLT
LSYGKVNESAVQLVSKSGCLAKVVPTQCSLVSIFCIYVILFRLLCNNSTV
FYFYY
Run BLAST on NCBI

transcript from alignment at sc0001311:54285..54753

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035422 ID=TCONS_00035422|Name=TCONS_00035422|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0001311:54285..54753 (Clytia hemisphaerica)
CaataatagaaatagaaaactgTAGAATTATTGCAAAGCAGACGGAAAAG
TATAACATAAATACAGAAGATACTCACTAAAGAACACTGTGTTGGAACAA
CTTTCGCGAGACAACCACTTTTTGAAACCAATTGCACTGCTGACTCGTTA
ACTTTTCCGTATGATAGGGTCAAAACATTTTCAGAgtacattttcaaaac
atttttaggtttttctttaaaaacacaaCATAATTTTTCGACTTTACAAA
TCGCACGATTCACATAAGTAGGTGGGACAATTTCAACTCTTTGAACTTCC
ATCACATACGATTTCGACGCGGCACACAACTTTGGGGCATCGCTAACAAT
TTGACACGAAAGTGTTTCGTCATTCTTTAGCAAACTCGGTGCATATTTCA
AAACTGCCAATGCTTCATGAATTGTTTCATGACCTAATTCATCCGGATAC
TTTGAAAACACATCATAGT

Coding sequence (CDS) from alignment at sc0001311:54285..54753

>TCONS_00035422 ID=TCONS_00035422|Name=TCONS_00035422|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0001311:54285..54753 (Clytia hemisphaerica)
ataatagaaatagaaaactgTAGAATTATTGCAAAGCAGACGGAAAAGTA
TAACATAAATACAGAAGATACTCACTAAAGAACACTGTGTTGGAACAACT
TTCGCGAGACAACCACTTTTTGAAACCAATTGCACTGCTGACTCGTTAAC
TTTTCCGTATGATAGGGTCAAAACATTTTCAGAgtacattttcaaaacat
ttttaggtttttctttaaaaacacaaCATAATTTTTCGACTTTACAAATC
GCACGATTCACATAAGTAGGTGGGACAATTTCAACTCTTTGAACTTCCAT
CACATACGATTTCGACGCGGCACACAACTTTGGGGCATCGCTAACAATTT
GACACGAAAGTGTTTCGTCATTCTTTAGCAAACTCGGTGCATATTTCAAA
ACTGCCAATGCTTCATGAATTGTTTCATGACCTAATTCATCCGGATACTT
TGAAAACACATCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020709XLOC_020709Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035422-proteinTCONS_00035422-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035422-exon-sc0001311-1491911889:54285..54753TCONS_00035422-exon-sc0001311-1491911889:54285..54753Clytia hemisphaericaexon
TCONS_00035422-exon-sc0001311-1510915933:54285..54753TCONS_00035422-exon-sc0001311-1510915933:54285..54753Clytia hemisphaericaexon
TCONS_00035422-exon-sc0001311-1575043694:54285..54753TCONS_00035422-exon-sc0001311-1575043694:54285..54753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001311supercontigsc0001311:54285..54753 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.95517	0.931441	0.617996	0.453459	0.552043	0.145411	0	0.492711	0.229972	0	0.691225	0.0908768	0.907505	1.69642	1.85958	1.99561	0.819477	2.20484	1.88568	2.42859	1.84703	1.54442	0.782271	0.853437	0	0	1.30973	0.399365	0	0.308611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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