TCONS_00035419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035419
Unique NameTCONS_00035419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035419 ID=TCONS_00035419|Name=TCONS_00035419|organism=Clytia hemisphaerica|type=transcript|length=599bp
AATATCAATATAGAAAAGAGTTGTTTTTCAAAGAGATTATAATGGATGGC
CAActtggaaaaattacatactatGCTCTCAGAGTAGAATTTACTTTCAA
GGGTAGTCCACATGATCATTGTTTGCTTTGGGCTAAAGATGTTCCAAAAC
TTGAAAATGGGAAAGAAAAGTATATTGAACACATAGATAGTGTTATTTCT
GCTAATGTTCCTGAGAGAGAAGAAAGTCCTGAATTATGGAAGTTAGTCGN
ACCAGACAAAGATCAGCATTTGTTTCTAAAACGTGACCCATATTCTTGTT
TTGTCAACAATTATTTTGCAGAAGGCCTCCTAGCATGGGAGGTCAACATC
GATATTCAGCCAGTCTTTAATGCATACAAGGCAGTTACATACATGCGtgc
ctatttttcaaaaagtgaagataAGTGTTCAACTGCAATGCAAGAAGCAT
TAAAACAGGCCAAAGATTCAAATGACAGTCAGTTTGAGAAGAGAGAGAGA
GTGAGAGAGAGAGTGAACCATCCTAGATCATTAGGAATTGGcctagaaaa
attaaatattaaataaaatatctCTAGGAAATTACTACGCGTAATAAAG
Run BLAST on NCBI

protein sequence of TCONS_00035419-protein

>TCONS_00035419-protein ID=TCONS_00035419-protein|Name=TCONS_00035419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
YQYRKELFFKEIIMDGQLGKITYYALRVEFTFKGSPHDHCLLWAKDVPKL
ENGKEKYIEHIDSVISANVPEREESPELWKLVXPDKDQHLFLKRDPYSCF
VNNYFAEGLLAWEVNIDIQPVFNAYKAVTYMRAYFSKSEDKCSTAMQEAL
KQAKDSNDSQFEKRERVRERVNHPRSLGIGLEKLNIK
Run BLAST on NCBI

transcript from alignment at sc0001311:47307..47905

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035419 ID=TCONS_00035419|Name=TCONS_00035419|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0001311:47307..47905 (Clytia hemisphaerica)
CTTTATTACGCGTAGTAATTTCCTAGagatattttatttaatatttaatt
tttctaggCCAATTCCTAATGATCTAGGATGGTTCACTCTCTCTCTCACT
CTCTCTCTCTTCTCAAACTGACTGTCATTTGAATCTTTGGCCTGTTTTAA
TGCTTCTTGCATTGCAGTTGAACACTtatcttcactttttgaaaaatagg
caCGCATGTATGTAACTGCCTTGTATGCATTAAAGACTGGCTGAATATCG
ATGTTGACCTCCCATGCTAGGAGGCCTTCTGCAAAATAATTGTTGACAAA
ACAAGAATATGGGTCACGTTTTAGAAACAAATGCTGATCTTTGTCTGGTN
CGACTAACTTCCATAATTCAGGACTTTCTTCTCTCTCAGGAACATTAGCA
GAAATAACACTATCTATGTGTTCAATATACTTTTCTTTCCCATTTTCAAG
TTTTGGAACATCTTTAGCCCAAAGCAAACAATGATCATGTGGACTACCCT
TGAAAGTAAATTCTACTCTGAGAGCatagtatgtaatttttccaagTTGG
CCATCCATTATAATCTCTTTGAAAAACAACTCTTTTCTATATTGATATT

Coding sequence (CDS) from alignment at sc0001311:47307..47905

>TCONS_00035419 ID=TCONS_00035419|Name=TCONS_00035419|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0001311:47307..47905 (Clytia hemisphaerica)
ttatttaatatttaatttttctaggCCAATTCCTAATGATCTAGGATGGT
TCACTCTCTCTCTCACTCTCTCTCTCTTCTCAAACTGACTGTCATTTGAA
TCTTTGGCCTGTTTTAATGCTTCTTGCATTGCAGTTGAACACTtatcttc
actttttgaaaaataggcaCGCATGTATGTAACTGCCTTGTATGCATTAA
AGACTGGCTGAATATCGATGTTGACCTCCCATGCTAGGAGGCCTTCTGCA
AAATAATTGTTGACAAAACAAGAATATGGGTCACGTTTTAGAAACAAATG
CTGATCTTTGTCTGGTNCGACTAACTTCCATAATTCAGGACTTTCTTCTC
TCTCAGGAACATTAGCAGAAATAACACTATCTATGTGTTCAATATACTTT
TCTTTCCCATTTTCAAGTTTTGGAACATCTTTAGCCCAAAGCAAACAATG
ATCATGTGGACTACCCTTGAAAGTAAATTCTACTCTGAGAGCatagtatg
taatttttccaagTTGGCCATCCATTATAATCTCTTTGAAAAACAACTCT
TTTCTATATTGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020706XLOC_020706Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035419-proteinTCONS_00035419-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035419-exon-sc0001311-1491911889:47307..47905TCONS_00035419-exon-sc0001311-1491911889:47307..47905Clytia hemisphaericaexon
TCONS_00035419-exon-sc0001311-1510915933:47307..47905TCONS_00035419-exon-sc0001311-1510915933:47307..47905Clytia hemisphaericaexon
TCONS_00035419-exon-sc0001311-1575043694:47307..47905TCONS_00035419-exon-sc0001311-1575043694:47307..47905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001311supercontigsc0001311:47307..47905 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87518	2.62963	1.8266	1.77272	1.96148	2.15074	1.35671	0.843294	0.748122	0.996378	0.401978	0.728158	0.91371	0.692212	0.567045	0.930989	0.652236	0.754434	0	1.05456	2.54178	3.45119	0.632282	0.706381	1.17203	0.998199	3.15337	2.49252	2.00722	1.75323
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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