TCONS_00035406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035406
Unique NameTCONS_00035406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length151

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035406 ID=TCONS_00035406|Name=TCONS_00035406|organism=Clytia hemisphaerica|type=transcript|length=151bp
AAACAGAATTACAAAAGGATGGCAACTGGATATATAAGGTTAGAGGAAGT
CCTCGGACAAAACTCTACTTTAAGAAGATCTATAACAAACCTGTTACTGA
AAACGAAATATTGTAAAGACGACTGGTTAAGAGGCCCACCGTGCGCCTAC
A
Run BLAST on NCBI

transcript from alignment at sc0001309:6072..6222

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035406 ID=TCONS_00035406|Name=TCONS_00035406|organism=Clytia hemisphaerica|type=transcript|length=151bp|location=Sequence derived from alignment at sc0001309:6072..6222 (Clytia hemisphaerica)
TGTAGGCGCACGGTGGGCCTCTTAACCAGTCGTCTTTACAATATTTCGTT
TTCAGTAACAGGTTTGTTATAGATCTTCTTAAAGTAGAGTTTTGTCCGAG
GACTTCCTCTAACCTTATATATCCAGTTGCCATCCTTTTGTAATTCTGTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020694XLOC_020694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035406-exon-sc0001309-1491911889:6072..6222TCONS_00035406-exon-sc0001309-1491911889:6072..6222Clytia hemisphaericaexon
TCONS_00035406-exon-sc0001309-1510915933:6072..6222TCONS_00035406-exon-sc0001309-1510915933:6072..6222Clytia hemisphaericaexon
TCONS_00035406-exon-sc0001309-1575043694:6072..6222TCONS_00035406-exon-sc0001309-1575043694:6072..6222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001309supercontigsc0001309:6072..6222 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top