TCONS_00035405 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035405
Unique NameTCONS_00035405
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035405 ID=TCONS_00035405|Name=TCONS_00035405|organism=Clytia hemisphaerica|type=transcript|length=1967bp
GGTAGTTATGCAATTCTACCTGATTAAATTCAACTTACTACGCAGTATTA
CTCTGTCTTTCATTGTTTGCAACTACACGAAATTTCTTCTATCATAGTTT
AGATTGTGGGTGAAGAATAATATTAAAAATGAACGACGTAACAAAATCAA
TGTTTCTGTCACCAGCAGCAACTACAgaatacaaaaatgaagaattgaGC
ATTCCCTTGGGTAATGATTTTCAAGCTATCAATTCCTTTCAAAGGGGATT
TGACCACACTGGCAAACACTTTTACATTCTCGAAGATATGGATTGTGGAG
ATCGTCTTCGTGTATTTATGGTCTATTTCAATGAACAACAAAATGCTCTC
GAGAAGAGAACTCTAACCATTGATTTCCAAGATATGGATGGTTCGGAATC
GGTCTGGAACTTAATGCGTATACTGGGAATGTTGTTGTCACTGTGAAGCA
TGATATACTCGATAATGATAatgcagagaaatttttagtagATGTTTATC
ATTATTATCTCCCTGATGTTTTTGTTGATCATCCGTATAAGGTATTGGAT
TTAACTATCGAGCCAAGTGAAGCAGATATTGTTTTAAGATTCGATGATAA
AGACTACGAAAGATGTCAAATTTGGTATGGATTAAGAGAAAACGACGTAA
CAGCACTTTTTGTGTTAAccattttcaaagaatataatgAGGAAGGAGAA
GCAACTCGTCTCCGTGACTGTTTGGATGTTATAAAGACACAGCAAACTGA
AATCTGTCATTCAAAGAGAGTTGTCATCGATCTCAGTCAATCTTCagttt
ttgacgattttttcttttttctcaatgcaacaaaagagagaatttatttt
ttatttccaaaGAGACAGTGTCTTAAGAATTGACGAATATGACTACACTG
GCAATTTTCGTTATGTTTATTCGATTGCAATAGATGATGGATACCATGAT
TATCATTTTAATGACCGTTATATTGTTTTATCACACAAAGGAATTACTCA
CAAGGATAATGCTATACGAGTTTGGGAATTGAATCAAGATAGGACATGTA
TTGTTCAAGAGTTTAATGATGAAATAATTGATTACGAAACATCAGATGCG
AAGTCGTTTTCGTTTCAATATTCGATCAAAAGGTTTGTTGATTTCCTTTT
GGTTGCCGATGCTTCTGACTTTAATAAAGGCAGACAGCTTGTCTCTTGGA
TTCAAATTTGCAATGGAGAGAAATTAAGAGGGTATGGGATTTTTAGAGGA
TTGCCTTTAccgaattatttttttaattggaATCTGCACGAAGTTGGGAT
CACTTATTTTGACGAGATGACGATGGAGaggcagaaaatgtttttcaaaa
tcgcTCATGTAAATATGAATGAATATGCAATTCAAAAAATCACTGTGAAA
CATTTGGCACGAGTGGTAGTACTTCAATTATTTAGCAGTAACGAATTACT
AAAGCTCAATCTACCATCAACTCTTTTTGGATATTTAGgaattgaaaagt
gaaaatttgatcgcttttattttttcatctgtTCTTTTATTTGCgttgtg
ttttcttttgaagCTGGCTTTTAATgctagaatttttgaaaatgttttta
tacaAGTTTTTATGCAAGTGCCTCACCAGAGTGGTCTTTGTTAAAAATTA
CCATTGATCATATCTGATAAATAATATGATTATCCTAGACTGCcactttt
ttttccatttttccatttttatcttGTTTTCTAAGATAGACTATTTGATC
ACtttgaacaaagaaaatttcgcaaataccttaagtggattaattttcac
gtGGATATAATTTGGcaattgacaaaaattgaattttttggcggggattt
aactCTGGTATATACATGATATTTTACTAAGAAATGCATATTCTCCATAG
AAAAATTtcgttaaatttggcggggatttaattcgGCGAAtggttgtttt
tgaaatttctgcAGGGG
Run BLAST on NCBI

protein sequence of TCONS_00035405-protein

>TCONS_00035405-protein ID=TCONS_00035405-protein|Name=TCONS_00035405-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MQQKREFIFYFQRDSVLRIDEYDYTGNFRYVYSIAIDDGYHDYHFNDRYI
VLSHKGITHKDNAIRVWELNQDRTCIVQEFNDEIIDYETSDAKSFSFQYS
IKRFVDFLLVADASDFNKGRQLVSWIQICNGEKLRGYGIFRGLPLPNYFF
NWNLHEVGITYFDEMTMERQKMFFKIAHVNMNEYAIQKITVKHLARVVVL
QLFSSNELLKLNLPSTLFGYLGIEK
Run BLAST on NCBI

transcript from alignment at sc0001309:66421..68446-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035405 ID=TCONS_00035405|Name=TCONS_00035405|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at sc0001309:66421..68446- (Clytia hemisphaerica)
GGTAGTTATGCAATTCTACCTGATTAAATTCAACTTACTACGCAGTATTA
CTCTGTCTTTCATTGTTTGCAACTACACGAAATTTCTTCTATCATAGTTT
AGATTGTGGGTGAAGAATAATATTAAAAATGAACGACGTAACAAAATCAA
TGTTTCTGTCACCAGCAGCAACTACAGAATACAAAAATGAAGAATTGAGC
ATTCCCTTGGGTAATGATTTTCAAGCTATCAATTCCTTTCAAAGGGGATT
TGACCACACTGGCAAACACTTTTACATTCTCGAAGATATGGATTGTGGAG
ATCGTCTTCGTGTATTTATGGTCTATTTCAATGAACAACAAAATGCTCTC
GAGAAGAGAACTCTAACCATTGATTTCCAAGATATGGATGGTTCGGAATC
GGTCTGGAACTTAATGCGTATACTGGGAATGTTGTTGTCACTGTGAAGCA
TGATATACTCGATAATGATAATGCAGAGAAATTTTTAGTAGATGTTTATC
ATTATTATCTCCCTGATGTTTTTGTTGATCATCCGTATAAGGTATTGGAT
TTAACTATCGAGCCAAGTGAAGCAGATATTGTTTTAAGATTCGATGATAA
AGACTACGAAAGATGTCAAATTTGGTATGGATTAAGAGAAAACGACGTAA
CAGCACTTTTTGTGTTAACCATTTTCAAAGAATATAATGAGGAAGGAGAA
GCAACTCGTCTCCGTGACTGTTTGGATGTTATAAAGACACAGCAAACTGA
AATCTGTCATTCAAAGAGAGTTGTCATCGATCTCAGTCAATCTTCAGTTT
TTGACGATTTTTTCTTTTTTCTCAATGCAACAAAAGAGAGAATTTATTTT
TTATTTCCAAAGAGACAGTGTCTTAAGAATTGACGAATATGACTACACTG
GCAATTTTCGTTATGTTTATTCGATTGCAATAGATGATGGATACCATGAT
TATCATTTTAATGACCGTTATATTGTTTTATCACACAAAGGAATTACTCA
CAAGGATAATGCTATACGAGTTTGGGAATTGAATCAAGATAGGACATGTA
TTGTTCAAGAGTTTAATGATGAAATAATTGATTACGAAACATCAGATGCG
AAGTCGTTTTCGTTTCAATATTCGATCAAAAGGTTTGTTGATTTCCTTTT
GGTTGCCGATGCTTCTGACTTTAATAAAGGCAGACAGCTTGTCTCTTGGA
TTCAAATTTGCAATGGAGAGAAATTAAGAGGGTATGGGATTTTTAGAGGA
TTGCCTTTACCGAATTATTTTTTTAATTGGAATCTGCACGAAGTTGGGAT
CACTTATTTTGACGAGATGACGATGGAGAGGCAGAAAATGTTTTTCAAAA
TCGCTCATGTAAATATGAATGAATATGCAATTCAAAAAATCACTGTGAAA
CATTTTGCACGAGTGGTAGTANTATGAATGAATATTCAATTCAAAAAATC
ACTCTGAAACATTTGGCACGAGTGGTAGTACTTCAATTATTTAGCAGTAA
CGAATTACTAAAGCTCAATCTACCATCAACTCTTTTTGGATATTTAGGAA
TTGAAAAGTGAAAATTTGATCGCTTTTATTTTTTCATCTGTTCTTTTATT
TGCGTTGTGTTTTCTTTTGAAGCTGGCTTTTAATGCTAGAATTTTTGAAA
ATGTTTTTATACAAGTTTTTATGCAAGTGCCTCACCAGAGTGGTCTTTGT
TAAAAATTACCATTGATCATATCTGATAAATAATATGATTATCCTAGACT
GCCACTTTTTTTTCCATTTTTCCATTTTTATCTTGTTTTCTAAGATAGAC
TATTTGATCACTTTGAACAAAGAAAATTTCGCAAATACCTTAAGTGGATT
AATTTTCACGTGGATATAATTTGGCAATTGACAAAAATTGAATTTTTTGG
CGGGGATTTAACTCTGGTATATACATGATATTTTACTAAGAAATGCATAT
TCTCCATAGAAAAATTTCGTTAAATTTGGCGGGGATTTAATTCGGCGAAT
GGTTGTTTTTGAAATTTCTGCAGGGG

Coding sequence (CDS) from alignment at sc0001309:66421..68446-

>TCONS_00035405 ID=TCONS_00035405|Name=TCONS_00035405|organism=Clytia hemisphaerica|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0001309:66421..68446- (Clytia hemisphaerica)
ATTTGGCACGAGTGGTAGTACTTCAATTATTTAGCAGTAACGAATTACTA
AAGCTCAATCTACCATCAACTCTTTTTGGATATTTAGGAATTGAAAAGTG
AATGCAACAAAAGAGAGAATTTATTTTTTATTTCCAAAGAGACAGTGTCT
TAAGAATTGACGAATATGACTACACTGGCAATTTTCGTTATGTTTATTCG
ATTGCAATAGATGATGGATACCATGATTATCATTTTAATGACCGTTATAT
TGTTTTATCACACAAAGGAATTACTCACAAGGATAATGCTATACGAGTTT
GGGAATTGAATCAAGATAGGACATGTATTGTTCAAGAGTTTAATGATGAA
ATAATTGATTACGAAACATCAGATGCGAAGTCGTTTTCGTTTCAATATTC
GATCAAAAGGTTTGTTGATTTCCTTTTGGTTGCCGATGCTTCTGACTTTA
ATAAAGGCAGACAGCTTGTCTCTTGGATTCAAATTTGCAATGGAGAGAAA
TTAAGAGGGTATGGGATTTTTAGAGGATTGCCTTTACCGAATTATTTTTT
TAATTGGAATCTGCACGAAGTTGGGATCACTTATTTTGACGAGATGACGA
TGGAGAGGCAGAAAATGTTTTTCAAAATCGCTCATGTAAATATGAATGAA
TATGCAATTCAAAAAATCACTGTGAAACATTTGGCACGAGTGGTAGTACT
TCAATTATTTAGCAGTAACGAATTACTAAAGCTCAATCTACCATCAACTC
TTTTTGGATATTTAGGAATTGAAAAGTGAATGCAACAAAAGAGAGAATTT
ATTTTTTATTTCCAAAGAGACAGTGTCTTAAGAATTGACGAATATGACTA
CACTGGCAATTTTCGTTATGTTTATTCGATTGCAATAGATGATGGATACC
ATGATTATCATTTTAATGACCGTTATATTGTTTTATCACACAAAGGAATT
ACTCACAAGGATAATGCTATACGAGTTTGGGAATTGAATCAAGATAGGAC
ATGTATTGTTCAAGAGTTTAATGATGAAATAATTGATTACGAAACATCAG
ATGCGAAGTCGTTTTCGTTTCAATATTCGATCAAAAGGTTTGTTGATTTC
CTTTTGGTTGCCGATGCTTCTGACTTTAATAAAGGCAGACAGCTTGTCTC
TTGGATTCAAATTTGCAATGGAGAGAAATTAAGAGGGTATGGGATTTTTA
GAGGATTGCCTTTACCGAATTATTTTTTTAATTGGAATCTGCACGAAGTT
GGGATCACTTATTTTGACGAGATGACGATGGAGAGGCAGAAAATGTTTTT
CAAAATCGCTCATGTAAATATGAATGAATATGCAATTCAAAAAATCACTG
TGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020693XLOC_020693Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035405-proteinTCONS_00035405-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035405-exon-sc0001309-1575043694:67046..68446TCONS_00035405-exon-sc0001309-1575043694:67046..68446Clytia hemisphaericaexon
TCONS_00035405-exon-sc0001309-1575043694:66421..66986TCONS_00035405-exon-sc0001309-1575043694:66421..66986Clytia hemisphaericaexon
TCONS_00035405-exon-sc0001309-1510915933:67046..68446TCONS_00035405-exon-sc0001309-1510915933:67046..68446Clytia hemisphaericaexon
TCONS_00035405-exon-sc0001309-1510915933:66421..66986TCONS_00035405-exon-sc0001309-1510915933:66421..66986Clytia hemisphaericaexon
TCONS_00035405-exon-sc0001309-1491911889:67046..68446TCONS_00035405-exon-sc0001309-1491911889:67046..68446Clytia hemisphaericaexon
TCONS_00035405-exon-sc0001309-1491911889:66421..66986TCONS_00035405-exon-sc0001309-1491911889:66421..66986Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001309supercontigsc0001309:66421..68446 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81294	1.57619	0.79342	0.858751	1.89053	0.940692	2.74373	3.14429	2.0458	1.43245	1.48673	1.24579	1.12082	1.14544	0.754492	0.55955	0.460062	0.777768	0.120486	0.139493	0.426438	0.427854	1.53187	0.940347	2.09579	3.1949	0.510635	0.281381	0.287168	0.473071
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top