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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035404 ID=TCONS_00035404|Name=TCONS_00035404|organism=Clytia hemisphaerica|type=transcript|length=1354bp
CGAAGCGTAATGTTCTATAACGGTTTGTTTTAATATGTATGCTTTCATTT
AAGTTCAAAAGTAAGAAAACAAAGAccgataaaaaaaattattaatatgg
ATTTGCCAAATGAGCTAtgGTAATTGGTGATTTTTTACTTAGATCTCAAA
AGTGCTCAGAATATTGCTCTTACTTCAAAGAAGATGCACCAGTTGTCAAT
AATGGCTTTGGTCAAAACCAAGCAAGATATACTAAGAATACAAAGGACAT
TGCATTTCTACACAAGATTTCCAATTTCCCGATTCGTTATAGATTTAACA
GATATGCTCTTGAAGGATTTgatgctacaatcatggtcaaaataatatat
tgagattttattGTATATACACTGAGCATCTTGTATTCAAAAGAAAGTct
gtatttttctaaaaaatctattaaaacGTACGAAATCTTTGAAGTTGATC
TTAATGGGAAGATTGTATTTTCATACATACTGCCATGGGATTCTGGTTTG
TTCAATTATCAGTCTTTATTACAATCTGGAGAAGGTGATTCAATGAATAA
CATTTTCATGGATAAGTCAGGAATCTTTTGCATGCAAAGAATTCTGGAGG
GTTATATTAGATCCAGTCAAGAATTCAAACTTCCTGTGAACCTTAAAATT
ACTAAAGTCAATTTTCCTGTTAGTCTAATATTGAAATTTGGACGTCTTTT
GATTCCCTTGCTTTACGAGCCGGACAAGTCATCGACGAATTTCTTTCTGT
TTGACTTGAATAGTAATCAGATTTCAAGTGAGATTAATGTAAATTCAAAT
GATGAAATGCAGAGATTTTCATTGAATTGGAATTTGAAAGAATTGGTTTA
TACTGGGTTCTATGTAAGCAATCACGAGGAGGGTGGCCAAGATGAGATGT
TGTTCAAAGCTCATAAGATTGTTTCCCCAAATATTAACCTAACTCTGAAA
TGTTTTGCGCGTCTTGCTGTTTTGACCTCGTTCAGTGAGGAAGAAATAAT
CAATCAAAATCTTCCAGAATCTTTATTCCGGTTTCTTGGAATTGAAAAAT
AAACTGTTGTACGGCgaagtactttaggcgtagaaactttcgcgagcaga
aactttcgcgattttcgcgaattttggcccttttcgcgaaagtaaatgtc
tttaaaaattctaggaagggccattcgcgaaagtttatgctcgcgaaaaa
ttcttgacaaaatagaaaatctgtgaaacttcaaactttgaaaaaaatgt
aatttttatggcactttttagcctgctaaaagactaataagtcaaaggac
aaatgtttcaagccaacccaagaagtatttgtgtctctaagccatttttt
caca Run BLAST on NCBI protein sequence of TCONS_00035404-protein >TCONS_00035404-protein ID=TCONS_00035404-protein|Name=TCONS_00035404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MNNIFMDKSGIFCMQRILEGYIRSSQEFKLPVNLKITKVNFPVSLILKFG
RLLIPLLYEPDKSSTNFFLFDLNSNQISSEINVNSNDEMQRFSLNWNLKE
LVYTGFYVSNHEEGGQDEMLFKAHKIVSPNINLTLKCFARLAVLTSFSEE
EIINQNLPESLFRFLGIEK Run BLAST on NCBI transcript from alignment at sc0001309:62076..63804- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035404 ID=TCONS_00035404|Name=TCONS_00035404|organism=Clytia hemisphaerica|type=transcript|length=1729bp|location=Sequence derived from alignment at sc0001309:62076..63804- (Clytia hemisphaerica)
CGAAGCGTAATGTTCTATAACGGTTTGTTTTAATATGTATGCTTTCATTT
AAGTTCAAAAGTAAGAAAACAAAGACCGATAAAAAAAATTATTAATATGG
ATTTGCCAAATGAGCTATGGTACCTTAAAGGAAGAAATTTTGGCGGGAAT
TTAATTTGGCGGATGGACGAAAAAACTAAATTTGGCGGGAATTTAATTTG
GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGGAAGA
AATTTTGGCGGGAATTTAATTTGGCGGATGGACGAAAAAACTAAATTTGG
CGGGAATTTAATTTGGCGGTCGCTTAAAAATTTAACCTTGAGATGGCGTC
AAAACAGCGAAAAAATAGCAAAAACACCTTAAAAGAGATCATATTATAAA
AATGTTTAATTTGGCGGGAACTTAATTTGGCGGATTTCAGTCAAATCCGC
CAAATCTGCCAAATTTTCTTTCCGCCAAAATTTCTTTCTTCAAGGTAATT
GGTGATTTTTTACTTAGATCTCAAAAGTGCTCAGAATATTGCTCTTACTT
CAAAGAAGATGCACCAGTTGTCAATAATGGCTTTGGTCAAAACCAAGCAA
GATATACTAAGAATACAAAGGACATTGCATTTCTACACAAGATTTCCAAT
TTCCCGATTCGTTATAGATTTAACAGATATGCTCTTGAAGGATTTGATGC
TACAATCATGGTCAAAATAATATATTGAGATTTTATTGTATATACACTGA
GCATCTTGTATTCAAAAGAAAGTCTGTATTTTTCTAAAAAATCTATTAAA
ACGTACGAAATCTTTGAAGTTGATCTTAATGGGAAGATTGTATTTTCATA
CATACTGCCATGGGATTCTGGTTTGTTCAATTATCAGTCTTTATTACAAT
CTGGAGAAGGTGATTCAATGAATAACATTTTCATGGATAAGTCAGGAATC
TTTTGCATGCAAAGAATTCTGGAGGGTTATATTAGATCCAGTCAAGAATT
CAAACTTCCTGTGAACCTTAAAATTACTAAAGTCAATTTTCCTGTTAGTC
TAATATTGAAATTTGGACGTCTTTTGATTCCCTTGCTTTACGAGCCGGAC
AAGTCATCGACGAATTTCTTTCTGTTTGACTTGAATAGTAATCAGATTTC
AAGTGAGATTAATGTAAATTCAAATGATGAAATGCAGAGATTTTCATTGA
ATTGGAATTTGAAAGAATTGGTTTATACTGGGTTCTATGTAAGCAATCAC
GAGGAGGGTGGCCAAGATGAGATGTTGTTCAAAGCTCATAAGATTGTTTC
CCCAAATATTAACCTAACTCTGAAATGTTTTGCGCGTCTTGCTGTTTTGA
CCTCGTTCAGTGAGGAAGAAATAATCAATCAAAATCTTCCAGAATCTTTA
TTCCGGTTTCTTGGAATTGAAAAATAAACTGTTGTACGGCGAAGTACTTT
AGGCGTAGAAACTTTCGCGAGCAGAAACTTTCGCGATTTTCGCGAATTTT
GGCCCTTTTCGCGAAAGTAAATGTCTTTAAAAATTCTAGGAAGGGCCATT
CGCGAAAGTTTATGCTCGCGAAAAATTCTTGACAAAATAGAAAATCTGTG
AAACTTCAAACTTTGAAAAAAATGTAATTTTTATGGCACTTTTTAGCCTG
CTAAAAGACTAATAAGTCAAAGGACAAATGTTTCAAGCCAACCCAAGAAG
TATTTGTGTCTCTAAGCCATTTTTTCACA Coding sequence (CDS) from alignment at sc0001309:62076..63804- >TCONS_00035404 ID=TCONS_00035404|Name=TCONS_00035404|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0001309:62076..63804- (Clytia hemisphaerica)
ATGAATAACATTTTCATGGATAAGTCAGGAATCTTTTGCATGCAAAGAAT
TCTGGAGGGTTATATTAGATCCAGTCAAGAATTCAAACTTCCTGTGAACC
TTAAAATTACTAAAGTCAATTTTCCTGTTAGTCTAATATTGAAATTTGGA
CGTCTTTTGATTCCCTTGCTTTACGAGCCGGACAAGTCATCGACGAATTT
CTTTCTGTTTGACTTGAATAGTAATCAGATTTCAAGTGAGATTAATGTAA
ATTCAAATGATGAAATGCAGAGATTTTCATTGAATTGGAATTTGAAAGAA
TTGGTTTATACTGGGTTCTATGTAAGCAATCACGAGGAGGGTGGCCAAGA
TGAGATGTTGTTCAAAGCTCATAAGATTGTTTCCCCAAATATTAACCTAA
CTCTGAAATGTTTTGCGCGTCTTGCTGTTTTGACCTCGTTCAGTGAGGAA
GAAATAATCAATCAAAATCTTCCAGAATCTTTATTCCGGTTTCTTGGAAT
TGAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035404-exon-sc0001309-1575043694:63686..63804 | TCONS_00035404-exon-sc0001309-1575043694:63686..63804 | Clytia hemisphaerica | exon |
| TCONS_00035404-exon-sc0001309-1575043694:62076..63310 | TCONS_00035404-exon-sc0001309-1575043694:62076..63310 | Clytia hemisphaerica | exon |
| TCONS_00035404-exon-sc0001309-1510915933:63686..63804 | TCONS_00035404-exon-sc0001309-1510915933:63686..63804 | Clytia hemisphaerica | exon |
| TCONS_00035404-exon-sc0001309-1510915933:62076..63310 | TCONS_00035404-exon-sc0001309-1510915933:62076..63310 | Clytia hemisphaerica | exon |
| TCONS_00035404-exon-sc0001309-1491911889:63686..63804 | TCONS_00035404-exon-sc0001309-1491911889:63686..63804 | Clytia hemisphaerica | exon |
| TCONS_00035404-exon-sc0001309-1491911889:62076..63310 | TCONS_00035404-exon-sc0001309-1491911889:62076..63310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001309 | supercontig | sc0001309:62076..63804 - |
Blast
The following BLAST results are available for this feature:
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