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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035402 ID=TCONS_00035402|Name=TCONS_00035402|organism=Clytia hemisphaerica|type=transcript|length=1524bp
ggaaaatttaaaacaattaaaaaatggCTGCAACGGAAAAGAAGTCATTG
TTCATGCCTACATACATCGATGAAAAAAAGATACAACCTCTCGCATTAGG
GGACAGCTTTGGATGGTACCCTAAACAAGGCTTTTATTGCTCTGGTAAAT
ACTATCTGTGGCTTCAAGattattacaaaaataatgatggTGTTATAGTT
GTACACATCATCAACTTCAATAAAGATGAATTGAAGTATGAACGAAAGAA
ACTGAGAATCAAAATTCCGGAAACAGAAGGCAGTTCGAAAAGAAATTCAG
AGCTTGATTTTATGAGTGGAAAGCTAGTGCATACTGTAGAACGCActtta
aaaagaaaaggaaaaaaagaactTGTTTTAGAGATTTATTACATCAACAT
GGTCGATTTTATCAATATGGATGATTTCGATGAGATAACAATCCAGAAGA
AGAAGTATGACCTTAGAATTATCTACGATTCGGAGCAATACAATGAACTT
GTGTTTAATTTATACAATCATCACTGTCAGAAAGAAACATTGGTACTTTC
ATGTCAAGCCTTTCAGGCGGAAGAGCGTGAGAATCATCAAATAATCGTGT
CAAATCAAGTTTGTTTGGATTTTGTTCACATAACCAGTAATAAATTATTG
CTTAATAAACAAGTCATTGTCAACTTGAAGGCTACACCTGGATTTTTGGA
TTATGTATCTGTACCACATGTGCATTGCAATGGTGACCGTATCTTATTCT
ACCAAGAAACAGAAGATGGTGAAAAAGAGATCTTATCCATTCAAGAATTT
GACTGTGATGGCATGAAGTCTGATGTTAGAGAAAATCGGGTTCGTTTTGT
TGAATTAAAAGATGGGGAAATGAAGTTAGTTGATAGTGATCGCATTTTCT
TTGGGGAACCATGGCGTGGTCTCTCCTACAGATTGAAGACTTCTTTTAGA
AGGCTTGATCGTAGGCTTCTACCAACTTACACCTATACATCTGGTAAGAA
GTTATTTCACCAGTTCACAACCTATGATttcaaaacgaaagaaaaagtaa
CTGAAGTATTCGACTTTGGTCTTCGCAATCCGTCTTATTCGGTGAACTGG
AATATCTTTGACATTGGAATGACCTATAGTGATAAAACCTTTCATGGTAA
CGTATTCTTCAAGCTCTGTCGTTCAAAGACCCGCTCCAAAGATCTGTCAT
TGAAGCACTTTTCAAGGTTTGTTGTGCTTACTAACTTCACCGAAGACTAT
TTGTTGAATCAAAACCTACCATCATCCGTATTCAAGTACCTTggtattca
aaaataaagaaatcgtctaatatattttttttatatttgttgatATTCTT
AGTTTAATCTCTGCATTAAAGGCAACTAATTTGGACGACCACTTCTTTAG
TAAAAagcaattttagaaaaaagcaaaattcggaaaatttattttatttt
ggcgaGGAATGGCAGGGTGacgagaaaaaatattttttcttcttattatc
atttttaattttagggGAAGTTTA Run BLAST on NCBI transcript from alignment at sc0001309:55963..57960- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035402 ID=TCONS_00035402|Name=TCONS_00035402|organism=Clytia hemisphaerica|type=transcript|length=1998bp|location=Sequence derived from alignment at sc0001309:55963..57960- (Clytia hemisphaerica)
GGAAAATTTAAAACAATTAAAAAATGGCTGCAACGGAAAAGAAGTCATTG
TTCATGCCTACATACATCGATGAAAAAAAGATACAACCTCTCGCATTAGG
GGACAGCTTTGGATGGTACCCTAAACAAGGCTTTTATTGCTCTGGTAAAT
ACTATCTGTGGCTTCAAGATTATTACAAAAATAATGATGGTGTTATAGTT
GTACACATCATCAACTTCAATAAAGATGAATTGAAGTATGAACGAAAGAA
ACTGAGAATCAAAATTCCGGAAACAGAAGGCAGTTCGAAAAGAAATTCAG
AGCTTGATTTTATGAGTGGAAAGCTAGTGCATACTGTAGAACGCACTTTA
AAAAGAAAAGGAAAAAAAGAACTTGTTTTAGAGATTTATTACATCAACAT
GGTCGATTTTATCAATATGGATGATTTCGATGAGATAACAATCCAGAAGA
AGAAGTATGACCTTAGAATTATCTACGATTCGGAGCAATACAATGAACTT
GTGTTTAATTTATACAATCATCACTGTCAGAAAGAAACATTGGTACTTTC
ATGTCAAGCCTTTCAGGCGGAAGAGCGTGAGAATCATCAAATAATCGTGT
CAAATCAAGTTTGTTTGGATTTTGTTCACATAACCAGTAATAAATTATTG
CTTAATAAACAAGTCATTGTCAACTTGAAGGCTACACCTGGATTTTTGGA
TTATGTATCTGTACCACATGTGCATTGCAATGGTGACCGTATCTTATTCT
ACCAAGAAACAGAAGATGGTGAAAAAGAGATCTTATCCATTCAAGAATTT
GACTGTGATGGTAAATTCATGTATTCATACTCAACACGGTACAGTGGAGT
TAATAGTGTTTTTGAAACTTATGGAAGATATTTGTTTCTTTATGAAGGCA
TGAAGTCTGATGTTAGAGAAAATCGGGTTCGTTTTGTTGAATTAAAAGAT
GGGGAAATGAAGTTAGTTGATAGTGATCGCATTTTCTTTGGGGAACCATG
GCGTGGTCTCTCCTACAGATTGAAGACTTCTTTTAGAAGGCTTGATCGTA
GGCTTCTACCAAATTACACCNCACCTGGATTTTTGGATTATGTATCTGTA
CCACATGTGCATTGCAATGGTGACCGTATCTTATTCTACCAAGAAACAGA
AGATGGTGAAAAAGAGATCTTATCCATTCAAGAATTTGACTGTGATGGTA
AATTCATGTATTCATACTCAACACGGTACAGTGGAGTTAATAGTGTTTTT
GAAACTTATGGAAGATATTTGTTTCTTTATGAAGGCATGAAGTCTGATGT
TAGAGAAAATCGGGTTCGTTTTGTTGAATTAAAAGATGGGGAAATGAAGT
TAGTTGATAGTGATCGCATTTTCTTTGGGGAACCATGGCGTGGTCTCTCC
TACAGATTGAAGACTTCTTTTAGAAGGCTTGATCGTAGGCTTCTACCAAC
TTACACCTATACATCTGGTAAGAAGTTATTTCACCAGTTCACAACCTATG
ATTTCAAAACGAAAGAAAAAGTAACTGAAGTATTCGACTTTGGTCTTCGC
AATCCGTCTTATTCGGTGAACTGGAATATCTTTGACATTGGAATGACCTA
TAGTGATAAAACCTTTCATGGTAACGTATTCTTCAAGCTCTGTCGTTCAA
AGACCCGCTCCAAAGATCTGTCATTGAAGCACTTTTCAAGGTTTGTTGTG
CTTACTAACTTCACCGAAGACTATTTGTTGAATCAAAACCTACCATCATC
CGTATTCAAGTACCTTGGTATTCAAAAATAAAGAAATCGTCTAATATATT
TTTTTTATATTTGTTGATATTCTTAGTTTAATCTCTGCATTAAAGGCAAC
TAATTTGGACGACCACTTCTTTAGTAAAAAGCAATTTTAGAAAAAAGCAA
AATTCGGAAAATTTATTTTATTTTGGCGAGGAATGGCAGGGTGACGAGAA
AAAATATTTTTTCTTCTTATTATCATTTTTAATTTTAGGGGAAGTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035402-exon-sc0001309-1575043694:57151..57960 | TCONS_00035402-exon-sc0001309-1575043694:57151..57960 | Clytia hemisphaerica | exon |
| TCONS_00035402-exon-sc0001309-1575043694:55963..56676 | TCONS_00035402-exon-sc0001309-1575043694:55963..56676 | Clytia hemisphaerica | exon |
| TCONS_00035402-exon-sc0001309-1510915933:57151..57960 | TCONS_00035402-exon-sc0001309-1510915933:57151..57960 | Clytia hemisphaerica | exon |
| TCONS_00035402-exon-sc0001309-1510915933:55963..56676 | TCONS_00035402-exon-sc0001309-1510915933:55963..56676 | Clytia hemisphaerica | exon |
| TCONS_00035402-exon-sc0001309-1491911889:57151..57960 | TCONS_00035402-exon-sc0001309-1491911889:57151..57960 | Clytia hemisphaerica | exon |
| TCONS_00035402-exon-sc0001309-1491911889:55963..56676 | TCONS_00035402-exon-sc0001309-1491911889:55963..56676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001309 | supercontig | sc0001309:55963..57960 - |
Blast
The following BLAST results are available for this feature:
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