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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035401 ID=TCONS_00035401|Name=TCONS_00035401|organism=Clytia hemisphaerica|type=transcript|length=1391bp
CCGTACAACAGTTTATTTTTCAATTCCAAGAAACCGGAATAAAGATTCTG
GAAGATTTTGATTGATTATTTCTTCCTCACTGAACGAGGTCAAAACAGCA
AGACGCGCAAAACATTTCAGAGTTAAGCCAATATTTGGGAAAACAATCTT
ATGAGCTTTGAACAACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTA
CATAGAACCCAGTATAAACCAATTCCTTTAAATTCCAATTTAATGAAAAC
GTCTGCATTTCATCATTTGGATTTACATTAATGTCACTTGAAATCTGTTT
GCTAGTCAAGTCAAACAGAAAAAATTTCGTCGATGAATTGTCTGGCTCGT
AAAGTAAGGGAATCAAAAGACGTCCAAATTTTAATATTGGACTAACAGGA
AAATCGACTTTAGTAATTTCAAGGTTTACAGGAAGTTTGAATTCTTGACT
GGATCCAATATGACCCTCTAGAAGTCTTTGCATGCAAAAGATTCCTGATT
TACCGTAGAAAATGACAATCATGGAATCACCTTCTCCAGATTGTAATAAA
TACTGATAATTATACAAACTAGAATCCCATGGCAGTATGTATGAAAATAC
AATTTTCCCATTAAGATCAACTTCAAAGATTTCATACGTTTTAACAGATT
TTGCAGAAAGAtacagcctttgttttgaacacAAGATCTTCATTGGATGG
TAAATACCGGAAGAAAAAATCTCCAAATTGCATTCCACCCTTTTCAAATG
AACCATATGCATCTTACTAACGTGCAAAACATCGATGCAAATCTCAGGTC
GATATCGGTAATACCATCTATCTTCTCTATATCTACAATACCCTTGGACA
AGCAGAGTTGATGATTTTCTATCAACACCACAACGTACAAAATAAGTCTT
GTTAAATCGTTCCTTGTCATAATTCAAAGTAATATCGGGTGTTTTGTCAA
TCACAATTACAGTATCATTCGATCTTTTCAAAAGGTCAAAGATATCGAGA
TAATAAAGTTCCACAACAATATTAACATCTTCTGATGTTTGATATTGAAC
AGTATGGACAACTTTGCCATGGTATGGAAACAAGAAAGACTGTCTGTCGC
ATTCACATTCGATAGGTATTGAGATCTTCAATATCTTCTTTCCAATCGAT
TCAGTTACTGCATCAAAATCGATAACAACAATAGCCATATCAAATTCTTC
ATACTCATCCATTGCAATAATGTAATATTTACCAGTACCATCAAAACCTT
GGTCGTAAATATCTCTGTAGAAATCTACGCCAAGTGAGATTGATAATTCA
TCTTTGCCAAGAATATTTGGAGGTACAAACATTGATTTTGCAATATtggt
cattttttttatttttcaatttgttaTTCTTAATCTGAAAA Run BLAST on NCBI transcript from alignment at sc0001309:62366..65496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035401 ID=TCONS_00035401|Name=TCONS_00035401|organism=Clytia hemisphaerica|type=transcript|length=3131bp|location=Sequence derived from alignment at sc0001309:62366..65496+ (Clytia hemisphaerica)
CCGTACAACAGTTTATTTTTCAATTCCAAGAAACCGGAATAAAGATTCTG
GAAGATTTTGATTGATTATTTCTTCCTCACTGAACGAGGTCAAAACAGCA
AGACGCGCAAAACATTTCAGAGTTAGGTTAATATTTGGGGAAACAATCTT
ATGAGCTTTGAACAACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTA
CATAGAACCCAGTATAAACCAATTCTTTCAAATTCCAATTCAATGAAAAT
CTCTGCATTTCATCATTTGAATTTACATTAATCTCACTTGAAATCTGATT
ACTATTCAAGTCAAACAGAAAGAAATTCGTCGATGACTTGTCCGGCTCGT
AAAGCAAGGGAATCAAAAGACGTCCAAATTTCAATATTAGACTAACAGGA
AAATTGACTTTAGTAATTTTAAGGTTCACAGGAAGTTTGAATTCTTGACT
GGATCTAATATAACCCTCCAGAATTCTTTGCATGCAAAAGATTCCTGACT
TATCCATGAAAATGTTATTCATTGAATCACCTTCTCCAGATTGTAATAAA
GACTGATAATTGAACAAACCAGAATCCCATGGCAGTATGTATGAAAATAC
AATCTTCCCATTAAGATCAACTTCAAAGATTTCGTACgttttaatagatt
ttttagaaaaatacagACTTTCTTTTGAATACAAGATGCTCAGTGTATAT
ACaataaaatctcaatatattattttgaccatgattgtagcatcAAATCC
TTCAAGAGCATATCTGTTAAATCTATAACGAATCGGGAAATTGGAAATCT
TGTGTAGAAATGCAATGTCCTTTGTATTCTTAGTATATCTTGCTTGGTTT
TGACCAAAGCCATTATTGACAACTGGTGCATCTTCTTTGAAGTAAGAGCA
ATATTCTGAGCACTTTTGAGATCTAAGTAAAAAATCACCAATTACcttga
agaaagaaattttggcggaaagaaaatttggcagatttggcggatttgac
tgaaatccgccaaattaagttcccgccaaattaaacatttttataatatg
atctcttttaaggtgtttttgctattttttcgctgttttgacgccatctc
aaggttaaatttttaagcgaccgccaaattaaattcccgccaaatttagt
tttttcgtccatccgccaaattaaattcccgccaaaatttcttcctttaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgccaaattaaatt
cccgccaaatttagttttttcgtccatccgccaaattaaattcccgccaa
aatttcttcctttaaggtaccaTAGCTCATTTGGCAAATccatattaata
attttttttatcggTCTTTGTTTTCTTACTTTTGAACTTAAATGAAAGCA
TACATATTAAAACAAACCGTTATAGAACATTACGCTTCGAGGTAAAAATG
AGGACATGTCAAGAACATTAGgttcaaaactcaaaaatttaaaaacatcc
taaggcttcaaaaatattgaatgttctTATGAGAAATAAACCTCTTGACT
AAGATTTAACACTGATCGAAATTTTAGTTCAATAACATTTTGCGTTCCTT
AGATACTTGAACTGATTTACGCATTAAGCTGCATTAAGCACAAAATTCAA
CCGACATAAAACAGGGAAATTTaagggaaacattttcatacattttgttt
atttttctaaagcAACGGAATGTTGCTTAGAAATACTTTGCTGTACAACA
GTTTATTTTTCGATTCCAAGAAACCGGAATAAAGATTCTGGAAGATTTTG
ATTGATTATTTCTTCCTCACTAAACGAGGTCAAAACAGCAAGACGCGCAA
AACATTTCAGAGTTAAGCCAATATTTGGGAAAACAATCTTATGAGCTTTG
AACAACATCTCATCTTGGCCACCCTCCTCGTGATTGCTTACATAGAACCC
AGTATAAACCAATTCCTTTAAATTCCAATTTAATGAAAACGTCTGCATTT
CATCATTTGGATTTACATTAATGTCACTTGAAATCTGTTTGCTAGTCAAG
TCAAACAGAAAAAATTTCGTCGATGAATTGTCTGGCTCGTAAAGTAAGGG
AATCAAAAGACGTCCAAATTTTAATATTGGACTAACAGGAAAATCGACTT
TAGTAATTTCAAGGTTTACAGGAAGTTTGAATTCTTGACTGGATCCAATA
TGACCCTCTAGAAGTCTTTGCATGCAAAAGATTCCTGATTTACCGTAGAA
AATGACAATCATGGAATCACCTTCTCCAGATTGTAATAAATACTGATAAT
TATACAAACTAGAATCCCATGGCAGTATGTATGAAAATACAATTTTCCCA
TTAAGATCAACTTCAAAGATTTCATACGTTTTAACAGATTTTGCAGAAAG
AtacagcctttgttttgaacacAAGATCTTCATTGGATGGTAAATACCGG
AAGAAAAAATCTCCAAATTGCATTCCACCCTTTTCAAATGAACCATATGC
ATCTTACTAACGTGCAAAACATCGATGCAAATCTCAGGTCGATATCGGTA
ATACCATCTATCTTCTCTATATCTACAATACCCTTGGACAAGCAGAGTTG
ATGATTTTCTATCAACACCACAACGTACAAAATAAGTCTTGTTAAATCGT
TCCTTGTCATAATTCAAAGTAATATCGGGTGTTTTGTCAATCACAATTAC
AGTATCATTCGATCTTTTCAAAAGGTCAAAGATATCGAGATAATAAAGTT
CCACAACAATATTAACATCTTCTGATGTTTGATATTGAACAGTATGGACA
ACTTTGCCATGGTATGGAAACAAGAAAGACTGTCTGTCGCATTCACATTC
GATAGGTATTGAGATCTTCAATATCTTCTTTCCAATCGATTCAGTTACTG
CATCAAAATCGATAACAACAATAGCCATATCAAATTCTTCATACTCATCC
ATTGCAATAATGTAATATTTACCAGTACCATCAAAACCTTGGTCGTAAAT
ATCTCTGTAGAAATCTACGCCAAGTGAGATTGATAATTCATCTTTGCCAA
GAATATTTGGAGGTACAAACATTGATTTTGCAATATtggtcatttttttt
atttttcaatttgttaTTCTTAATCTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035401-exon-sc0001309-1491911889:62366..62453 | TCONS_00035401-exon-sc0001309-1491911889:62366..62453 | Clytia hemisphaerica | exon |
| TCONS_00035401-exon-sc0001309-1510915933:62366..62453 | TCONS_00035401-exon-sc0001309-1510915933:62366..62453 | Clytia hemisphaerica | exon |
| TCONS_00035401-exon-sc0001309-1575043694:62366..62453 | TCONS_00035401-exon-sc0001309-1575043694:62366..62453 | Clytia hemisphaerica | exon |
| TCONS_00035401-exon-sc0001309-1491911889:64194..65496 | TCONS_00035401-exon-sc0001309-1491911889:64194..65496 | Clytia hemisphaerica | exon |
| TCONS_00035401-exon-sc0001309-1510915933:64194..65496 | TCONS_00035401-exon-sc0001309-1510915933:64194..65496 | Clytia hemisphaerica | exon |
| TCONS_00035401-exon-sc0001309-1575043694:64194..65496 | TCONS_00035401-exon-sc0001309-1575043694:64194..65496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001309 | supercontig | sc0001309:62366..65496 + |
Blast
The following BLAST results are available for this feature:
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